SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7756

Length: 551 nt

UniGene Fasta

>uagpf_v2_unigene7756
CGTCGTGACCTTGGCTGTCACTCATTTTAATTGCAACTGATATGATAGCTCGTGGCATGGATTTCAAGGGTGTGAACTGCGTAATTAATTATGACTTTCCTGAATCAGCCGCTGTATATATACATCGTGTTGGTCGCTGTGGAAGAGCTGGACGTGCTGGAGAGGCAGTTAGTCTATACACTGAGGATGATGTTCCATTCTTGCGAAATATAGCTAACGTCATGGTGTCATCTGGCTGTGAAGTTCCTTCATGGATTTTGAATCTACCAAAGCTTAAAAGGAAAAGGCACCGTCCTGCACGTGATTCCATCTCCACAAATCCTTCTGAAGTTCATACCTCCAAGAAGTATGCATAATATGGAAGTAACATAGCAAAGCATAACTGGAATTTTTGTTTGTGGCATGTGCCCAATGCAAAATTCTATGGGATGTACTTTGCTTGAGATCCCTTTTCCATATTTTCTGCCATCAACGTAACCAAAGCTGTAAAAAACTGCAGCATATTCTTATTAGAGTTCGATTATTTGTTTGAACTCTACACGGGTTTTCGC

Ace file of the UniGene uagpf_v2_unigene7756

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13589	15/16

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana] sp\|Q84TG1.1\|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57 gb\|AAO64768.1\| At3g09720 [Arabidopsis thaliana] dbj\|BAE99340.1\| RNA helicase like protein [Arabidopsis thaliana] gb\|A	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	dead-box atp-dependent rna helicase 57	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DBP10CT	IPR012541	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 118 - 593

Fln protein: S*PWLSLILIATDMIARGMDFKGVNCVINYDFPESAAVYIHRVGRCGRAGRAGEAVSLYTEDDVPFLRNIANVMVSSGCEVPSWILNLPKLKRKRHRPARDSISTNPSEVHTSKKYA*

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAATTGCAACTGATATGATAGCTCGTGGCATGGATTTCAAGGGTGTGAACTGCGTAATTAATTATGACTTTCCTGAATCAGCCGCTGTATATATACATCGTGTTGGTCGCTGTGGAAGAGCTGGACGTGCTGGAGAGGCAGTTAGTCTATACACTGAGGATGATGTTCCATTCTTGCGAAATATAGCTAACGTCATGGTGTCATCTGGCTGTGAAGTTCCTTCATGGATTTTGAATCTACCAAAGCTTAAAAGGAAAAGGCACCGTCCTGCACGTGATTCCATCTCCACAAATCCTTCTGAAGTTCATACCTCCAAGAAGTATGCATAA___TATGGAAGTAACATAGCAAAGCATAACTGGAATTTTTGTTTGTGGCATGTGCCCAATGCAAAATTCTATGGGATGTACTTTGCTTGAGATCCCTTTTCCATATTTTCTGCCATCAACGTAACCAAAGCTGTAAAAAACTGCAGCATATTCTTATTAGAGTTCGATTATTTGTTTGAACTCTACACGGGTTTTCGC

Fln Alignment:

Contig7756___SLILIATDMIARGMDFKGVNCVINYDFPESAAVYIHXXXXXXXXXXXXXXVSLYTEDDVPFLRNIANVMVSSGCEV
C0PQ26_______________SPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
170		33		66	0.997452
299		88	11		0.923564
300	88	11			0.923564
301		88		11	0.923564
304		11	88		0.923564
306		11		88	0.923564
309	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain