SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7751

Length: 780 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7751

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5554	4/6
SustainPine v2.0	sp_v2.0_unigene70709	2/6

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb\|AAK25908.1\|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AAN13185.1\| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AED91040.1\| ubiq	-	-	83%
FL-Next	Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12	-	-	91%
Blast2go	ubiquitin carboxyl-terminal hydrolase 12-like	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	93%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	93%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	93%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
113	66			33	0.997452
116	66		33		0.997452
117	66			33	0.997452
119	33		66		0.997452
120	66	33			0.997452
121		33	66		0.997452
124	66		33		0.997452
125	66		33		0.997452
129	66			33	0.997452
130	66	33			0.997452
136	33			66	0.997452
308	66			33	0.997452
309	66	33			0.997452
312		66	33		0.997452
314	66	33			0.997452
316	66			33	0.997452
317	66			33	0.997452
321	66			33	0.997452
322	66		33		0.997452
323	66			33	0.997452
324		33	66		0.997452
326		33	66		0.997452
344	66		33		0.997452
404	66			33	0.997452
406			66	33	0.997452
407		66		33	0.997452
409			33	66	0.997452
410		33		66	0.997452
518		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain