SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7742

Length: 1088 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7742

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5215	31/31

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 4-epimerase-like protein [Arabidopsis thaliana] emb\|CAB79046.1\| UDP-glucose 4-epimerase-like protein [Arabidopsis thaliana] gb\|AAM91643.1\| putative UDP-glucose 4-epimerase protein [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	udp-arabinose 4-epimerase 1	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-arabinose 4-epimerase.	EC:5.1.3.5	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	82%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	82%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-sugar metabolic process	GO:0009225	Biological Process	82%
Blast2go	galactose metabolic process	GO:0006012	Biological Process	82%
Blast2go	UDP-arabinose 4-epimerase activity	GO:0050373	Molecular Function	82%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	82%
Blast2go	UDP-glucose 4-epimerase activity	GO:0003978	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Sulfatase	IPR000917	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	UDP-glucose 4-epimerase	IPR005886	-	-
Sma3	Nucleotide sugar epimerase	IPR008089	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKM2

Fln msg: your sequence is shorter than subject: 253 - 356

Fln protein: VVTLAVTQLRYYHNITSNTLTVLEAMVANNVKRLIYSSTCATYGEPKTMPITEDTPQLPINPYGKAKKMAEEIIKDYARSSDLGVTILRYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDYETRDGTCVRDYIHVTDLIDAHVKALNKTQSGHVDVYNVGTGKGSTVKEFVESCKQATGVNITIVSLERRPGDYAEVYSDPSKIQRELNWFAQYTNLTESLAVAWSWRRTHPVGY*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTAAGGTACTATCACAACATTACATCAAATACCTTGACTGTTTTGGAAGCAATGGTTGCCAATAATGTGAAGAGGCTTATTTATTCCAGCACCTGTGCAACATATGGAGAACCCAAGACAATGCCAATAACTGAAGATACTCCTCAATTGCCTATCAACCCCTATGGAAAAGCTAAGAAAATGGCCGAGGAGATAATTAAAGACTATGCAAGAAGCTCAGATCTGGGTGTAACCATTTTAAGGTACTTTAATGTTATTGGCTCAGATCCTGAAGGGAGGCTTGGTGAAGCACCAAGACCGGAGTTGCGAAATCATGGTCGCATTTCTGGTGCATGTTTTGATGCGGCAATGGGCATCATTCCTGGTTTACAGATCAAGGGAACTGATTATGAAACCAGAGATGGAACATGTGTCAGGGATTACATCCATGTAACTGATTTAATTGATGCTCATGTTAAGGCTCTGAATAAAACTCAATCAGGGCATGTTGATGTTTATAATGTGGGCACTGGCAAGGGTAGCACTGTAAAAGAGTTCGTTGAATCTTGCAAGCAGGCAACTGGGGTCAACATCACTATAGTCTCGTTGGAGAGAAGACCAGGTGACTATGCTGAAGTGTACAGTGATCCTTCTAAAATTCAGCGAGAACTTAACTGGTTTGCACAGTACACAAATCTTACAGAAAGTTTGGCTGTTGCTTGGAGTTGGCGAAGAACTCATCCAGTTGGCTATTGA___ACCAATAAATTATGTGTTAACTATGTTGATTTAACATGCCCAGAATTACATCACATTGTATTTGCTATCCATGCAGCACAATTTGTCATTCAATCTCCGTCCGAGGAAATGGCAGCATTGTATGGCTCTATTTCATGCTGTAAGAGGTAATTCGGGTAGGATCAAGAGAACGTAAGGGTAGGCCATCGTCTCCAGGTTAAATGTAGAAGATTTGTTTTATTCAGCATAGGTCCTAGGCTCCAGGGTAAATGTGTAAGATTCAATTTTTTCAGTAGAAAAGATAAGGTTGTACCGCGATTGCAATTGCGGGGTGAACACATACCAGTGA

Fln Alignment:

Contig7742___RYYHNITSNTLTVLEAMVANNVKRLIYSSTCATYGEPKTMPITEDTPQLPINPYGKAKKMAEEIIKD-YARSSDLGVTILRYFNVIGSDPEGRLGEAPRPELRNHGRISGACFDAAMGIIPGLQIKGTDYETRDGTCVRDYIHVTDLIDAHVKALNKTQSGH---VDVYNVGTGKGSTVKEFVESCKQATGVNITIVSLERRPGDYAEVYSDPSKIQRELNWFAQYTNLTESLAVAWSWRRTHPVGY
B8LKM2_______________RYYKNNLVGTLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDVYQADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNN---LMPFIQQVAVGRQPELNVYGNDYPTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGCGTSVLEMVAAFEKASGKNIPVKFCPRRPGDATAVYASTEKAEHELGWKAKY-GIEEMCRDQWNWARQNPWGY

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
76	40	60			1.0
77	40		60		1.0
79		40	60		1.0
82			40	60	1.0
83	40		60		1.0
86	40			60	1.0
87	40			60	1.0
88			40	60	1.0
89	40		60		1.0
90	40	60			1.0
94		40	60		1.0
97	40			60	1.0
98		40	60		1.0
227	80			20	0.995493
247	75			25	1.0
250		25		75	1.0
256		25	75		1.0
260	71	28			1.0
519		33		66	0.997452
520	25	25	50		0.995533
521	50	25	25		0.995533
523		25	50		1.0
524	25		25		0.995533
525	25		25	50	0.995533
527			25	75	0.996473
529		25		75	0.996473
530	75	25			0.996473
531	75			25	0.996473
534		25		75	0.996473
535			75	25	0.996473
537			75	25	0.996473
543		25	75		0.996473
544	25	75			0.996473
665	85			14	0.999981
813			11	88	0.999952
819	88			11	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain