SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7652

Length: 1075 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7652

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5081	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] ref\|NP_850780.1\| zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] sp\|Q9FNG6.1\|C3H51_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 51; Short=AtC3H51 d	-	-	69%
FL-Next	sp=Zinc finger CCCH domain-containing protein 15; Oryza sativa subsp. japonica (Rice).	-	-	79%
Blast2go	zinc finger ccch domain-containing protein 51	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3		IPR013084	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6K4V3

Fln msg: Separated hits, possible frame ERROR between 332 and 392, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 202 - 326

Fln protein: S*PWLSLKGSNPGDEKLYKGIHGYTDHKAGFRREHTVSGEKAGGAHGPLRASAHIRSSIRFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQMEREWQEAEKKRxxxxxxxxxxxxxxxxxxxxxALPFACYICRQPFEDPVVTKCKHYFCEHCALKHHARNKNCYVCNKPTNGVFNTAHEIRRKMGKDNVGAKNK*

Protein Length: 203

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGTAGTAATCCGGGCGATGAAAAACTTTATAAAGGTATTCACGGTTATACCGATCACAAAGCAGGTTTTAGAAGAGAACACACAGTTTCCGGAGAAAAGGCTGGCGGTGCGCATGGGCCTCTTAGGGCTTCTGCTCATATCAGGTCTTCTATAAGATTTGATTATCAGCCCGACATCTGTAAGGACTACAAGGAGACTGGTTATTGTGGCTATGGGGATGCTTGCAAGTTCATGCATGATAGAGGGGATTATAAGTCTGGTTGGCAGATGGAGAGAGAATGGCAGGAAGCTGAGAAGAAGCGAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCATTGCCTTTCGCGTGCTATATATGTAGGCAGCCTTTCGAGGACCCTGTTGTTACTAAATGCAAGCATTATTTCTGCGAGCACTGTGCCCTGAAGCATCATGCCAGAAACAAAAATTGCTATGTTTGCAACAAGCCTACAAATGGTGTCTTTAACACTGCCCATGAGATCCGGCGAAAGATGGGGAAAGACAATGTTGGTGCAAAAAATAA___ATAAATAAATGGCATTGATGAAAGCAGAAGGATTTTGATACTAGAAGACTAGTCCAAAAGTAAAGGCAAGAAGTATCAACTCGACGAGACTAAGCATAATATCGTGGGACTGCCATCATTTTCTCCAACAAATAAGCATTATAGATTTGGATCTGTTGTATTAATTTATTTTTGGCATAAAAATATCGATTTGACCCTCATTTTGGGTAGCTTGGTTAAGCAATTATCTTCTGTATAAAAGTAGATAAGCAATACATAGGAAAGCTAGAGAGAGAGAGATAAAATACATACATACCTTGCTATATTGAACTTTGTTTTCCAGTACAGCAAGAGTGGATTTTATGATATAATTTTGCAGTAACTATTTATATTTTTCACAGCAACACTACTAAGAGGGCCCCTTGGTAGTGCTACTTATATTTCTTTAAGTTTTAGTGTGATTTCTTTTCATAATTCATAAGATGTATATGAT

Fln Alignment:

Contig7652___PWLSLKGSNPGDEKLYKGIHGYTDHKAGFRREHTVSGEKAGGAHGPLRASAHIRSSIRFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQMEREWQEAEKKRKxxxxxxxxxxxxxxxxxxxxALPFACYICRQPFEDPVVTKCKHYFCEHCALKHHARNKNCYVCNKPTNGVFNTAHEIRRKMGKD
Q6K4V3_______________PSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEAEKARKxxxxxxxxxxxxxxxxxxxxALPFACYICREPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNKPTLGIFNAAQEIRKKMAQD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1		83		16	0.994512
4	16	83			0.994512
5			83	16	0.994512
6		16		83	0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
598	613	AAAT AAAT AAAT AAAT	16
870	882	AG AG AG AG AG AG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain