SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7562

Length: 525 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene7562
ATCTGTTGTGATACGTGTAAGAAATGGTTCCATGGCAAGTGTCTTAAGATTACTCCTGCGATAGCCGAACACATTAAGCATTATAAATGTCCATCTTGCAGCAACAAAAGGCCCCGAATTTAATGGATGGCCGAGGGGATCTTTAATTCAACTTGACAGGTGATGACTATCTCTAATGTTTCTACCCAGTGGTTTCGGATGCAGAAGTGTCTGCAGCCCTTTTGGTTTGTTACTTGCACTTAGAAGGCTTAATTAGCTTCGTCTTGAGCTGTTGGCTGTCACAAGCTGAAAGCTGAATCTGTTGGAGGTGGTCAGTGTTTTTCATTCAGCCTAGGATGTTAGGAGAGATGGGTCTGATCCACAGACTTGGAAATGGGTTTGATCCACAGACCTAGTTCCTAGCTCTTGGATCTTCTCTGTTAGTGTTAGATAGATGTGTTGATTTACTTCTTGCTATTGTATCATTGTTGGGAAACCGTTTGTTCTACCGCTGTGTATGGACATATTGTGCTCAACAGTGCATTG

Ace file of the UniGene uagpf_v2_unigene7562 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25146	6/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PHD domain containing protein	-	-	9.0e-13	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	dna binding	-	-	2.60232e-39	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	2.60232e-39	80%
Blast2go	nucleus	GO:0005634	Cellular Component	2.60232e-39	80%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR017458	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI0

Fln msg: your sequence is shorter than subject: 41 - 262

Fln protein: ICCDTCKKWFHGKCLKITPAIAEHIKHYKCPSCSNKRPRI*

Protein Length: 42

Fln nts: ATCTGTTGTGATACGTGTAAGAAATGGTTCCATGGCAAGTGTCTTAAGATTACTCCTGCGATAGCCGAACACATTAAGCATTATAAATGTCCATCTTGCAGCAACAAAAGGCCCCGAATTTAA___TGGATGGCCGAGGGGATCTTTAATTCAACTTGACAGGTGATGACTATCTCTAATGTTTCTACCCAGTGGTTTCGGATGCAGAAGTGTCTGCAGCCCTTTTGGTTTGTTACTTGCACTTAGAAGGCTTAATTAGCTTCGTCTTGAGCTGTTGGCTGTCACAAGCTGAAAGCTGAATCTGTTGGAGGTGGTCAGTGTTTTTCATTCAGCCTAGGATGTTAGGAGAGATGGGTCTGATCCACAGACTTGGAAATGGGTTTGATCCACAGACCTAGTTCCTAGCTCTTGGATCTTCTCTGTTAGTGTTAGATAGATGTGTTGATTTACTTCTTGCTATTGTATCATTGTTGGGAAACCGTTTGTTCTACCGCTGTGTATGGACATATTGTGCTCAACAGTGCATTG

Fln Alignment:

Contig7562___ICCDTCKKWFHGKCLKITPAIAEHIKHYKCPSCSNKRPRI
A9NZI0_______________ICCDMCEKWFHGKCVKITPARAEHIKHYKCPSCSNKRPRV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
220		88		11	0.923564
221			11	88	0.923564
222	11	88			0.923564
223		88	11		0.923564
224	88			11	0.923564
230	88	11			0.923564
231		11		88	0.923564
232	11			88	0.923564
236		88	11		0.923564
238		12		87	0.992554
239	12			87	0.992554
241	87		12		0.992554
242	12		87		0.992554
244			12	87	0.992554
255	85			14	0.993533
258		28	71		1.0
260		71		28	1.0
262	28	71			1.0
263			71	28	1.0
264	71			28	1.0
265		71	28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain