SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7561

Length: 331 nt

UniGene Fasta

>uagpf_v2_unigene7561
CGTCGTGACCTTGGCTGTCACTCAATTTCGCCGCAGAGGGCACAGTTGGCTGGCCCTACAGAGTCTTTGAATAGCTCAGACCAGCTCCAGCATGGTGATGTAGACAGAGGTGTGAAAAGGTTTGTGAGGCAATCGGTACAGCATTCGCAGATTGGTACAATTTCACAGCTTTTAGCAGGAGGTGTTGCAGGTGCTGTCAGCAAGACCTGCACTGCTCCATTGGCTCGGCTTACCATTCTGTTTCAGGTTCAAGGCATGCACTCTGATGGTGCGTGTTTGCATAAAGCAAGTATTTTCCGTGAAGCATCCCGGATTGCTTCTGAAGAAGGAG

Ace file of the UniGene uagpf_v2_unigene7561

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5924	7/8
SustainPine v2.0	sp_v2.0_unigene78183	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	putative peroxisomal Ca-dependent solute carrier protein [Oryza sativa Japonica Group] gb\|AAP06894.1\| hypothetical protein [Oryza sativa Japonica Group]	-	-	73%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	62%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	80%
Blast2go	binding	GO:0005488	Molecular Function	80%
Blast2go	transporter activity	GO:0005215	Molecular Function	80%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9HC54

Fln msg: Distance to subject end: 238 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 110 - 347

Fln protein: RRDLGCHSISPQRAQLAGPTESLNSSDQLQHGDVDRGVKRFVRQSVQHSQIGTISQLLAGGVAGAVSKTCTAPLARLTILFQVQGMHSDGACLHKASIFREASRIASEEG

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCGCCGCAGAGGGCACAGTTGGCTGGCCCTACAGAGTCTTTGAATAGCTCAGACCAGCTCCAGCATGGTGATGTAGACAGAGGTGTGAAAAGGTTTGTGAGGCAATCGGTACAGCATTCGCAGATTGGTACAATTTCACAGCTTTTAGCAGGAGGTGTTGCAGGTGCTGTCAGCAAGACCTGCACTGCTCCATTGGCTCGGCTTACCATTCTGTTTCAGGTTCAAGGCATGCACTCTGATGGTGCGTGTTTGCATAAAGCAAGTATTTTCCGTGAAGCATCCCGGATTGCTTCTGAAGAAGGAG

Fln Alignment:

Contig7561___AQLAGPTESLNSSDQLQHGDV-DRGVKRFVRQS-----VQHSQIGTISQLLAGGVAGAVSKTCTAPLARLTILFQVQGMHSDGACLHKASIFREASRIASEEG
B9HC54_______________AVVEGGQRALNSAAAAAHGSILDAGARRFLQQQHNNSHQQHSQLGTIQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDVTALSKASIWREASRVMNEEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain