SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7483

Length: 1592 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7483

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6584	44/52
SustainPine v2.0	sp_v2.0_unigene64633	4/52
SustainPine v2.0	sp_v2.0_unigene72445	2/52

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N6 [Arabidopsis thaliana] gb\|AAF88122.1\|AC021043_15 Similar to 26S proteasome subunits [Arabidopsis thaliana] gb\|AAK44018.1\|AF370203_1 putative 19S proteosome subunit 9 [Arabidopsis thaliana] gb\|AAL07160.1\| putative 19S p	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	92%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	binding	GO:0005488	Molecular Function	92%
Blast2go	proteasome regulatory particle, lid subcomplex	GO:0008541	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	PCI/PINT associated module	IPR013143	-	-
Sma3	Proteasome component (PCI) domain	IPR000717	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ67

Fln msg: your sequence is shorter than subject: 423 - 439

Fln protein: MASIPATTESLSRALDIKDTDPAESISILRQIIENPSSSSEAIRVKEQAISNLSDLLTQEKRGEELRSLLTLLRPFFLLIPKAKTAKIVRGILDAVAKIPGTTDLQISLCREMVEWTRLEKRTFLRQRVEARLAALLMETKEYSEALTLISGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGFSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVNQADDVAGLIASKAGLLYMGVELDAMKAVADAHSKRSLKDFEDALKTYQAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEISHISDLIGLPMETVEKKLSQMILEKKFAGTLDQGAGCLIIFDDPKPDAIFSSTLETISNISKVVDSLYLKSAKIMA*

Protein Length: 424

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTAACTTTTCCTTTCTCTTTTCTTTGTACATGTTAAAAGCTACATAAAATGACGGACTCCGAAATCTTTATTAAGTCTGAAAATATCATTCTAAGATCCGCATGTTGAAACTTCACTTCGTGGTTCATGGTCCATTGCAAGTGAAATAAAAGGAGCCCTGCAGTACGCATGCCTGCGTGACGCTGCTCAATTCGCTGAGAAAACATCTTTTCGATCGCTCTGCCGGTTTGCAGTA_-_ATGGCATCGATCCCTGCAACAACGGAGTCTCTTAGTCGTGCATTGGACATTAAGGATACCGACCCTGCAGAGTCAATTTCTATCCTTCGTCAGATAATTGAAAACCCTTCTTCATCCTCTGAAGCTATCCGGGTCAAGGAGCAGGCGATTTCCAACCTTTCTGATCTTCTCACACAGGAGAAGAGGGGGGAAGAGCTGAGGAGTCTCCTGACACTTTTACGCCCCTTCTTTTTGCTGATTCCAAAAGCTAAGACTGCTAAGATTGTCAGAGGAATACTTGATGCAGTTGCGAAAATCCCCGGAACAACAGATCTTCAGATATCACTCTGTAGGGAAATGGTGGAATGGACCCGCTTGGAGAAACGGACTTTTTTGAGGCAGAGGGTTGAAGCAAGGCTTGCTGCTTTATTAATGGAAACCAAGGAGTACTCTGAAGCTTTAACTCTCATTTCTGGTTTGGTAAAGGAGGTTAGGAGGCTGGATGATAAGCTGCTTCTTGTGGATATCGATTTATTGGAGAGTAAACTTCATTTCTCTCTTAGAAATCTTCCAAAGGCTAAGGCTGCGCTAACTGCAGCCAGAACAGCGGCGAATGCAATATACGTTCCACCTGCTCAACAAGGGACTATTGATCTTCAGAGTGGTATTCTTCATGCCGAGGAGAAGGATTATAAAACGGGTTTCAGCTACTTCTTTGAGGCATTTGAGGCTTTTAATGCTCTGGAGGATCCGCGTGCAGTATTTAGTTTGAAGTACATGCTTTTGTGCAAGATCATGGTCAACCAAGCTGATGATGTCGCTGGTCTCATTGCTTCAAAGGCAGGCTTGCTCTATATGGGAGTGGAATTGGATGCTATGAAAGCTGTTGCGGATGCACACTCAAAGCGCTCTTTGAAAGATTTTGAAGATGCACTTAAAACTTACCAGGCACAACTAGAGGAAGATCCTATTGTTCATAGACACCTGTCTTCTTTGTACGACACCCTTCTGGAGCAGAATCTCTGCCGTTTGATTGAACCTTATTCAAGGGTTGAAATATCACATATATCTGATTTGATTGGATTGCCCATGGAAACTGTGGAAAAGAAGCTCTCTCAGATGATTTTGGAGAAAAAATTTGCTGGGACTCTTGACCAGGGTGCAGGTTGTCTTATTATTTTTGATGATCCAAAGCCAGATGCCATCTTCTCCTCCACTTTGGAAACGATTTCAAACATTAGCAAAGTTGTAGACAGCCTTTACCTGAAGTCAGCAAAGATTATGGCCTAA___GCTAAGCTTATTGGTTTGCATCTCTATGTCAAAAGTCAGTGATTTAGATTTCTGATAAGCA

Fln Alignment:

Contig7483___PAQQGTIDLQSGILHAEEKDYKTGFSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVNQADDVAGLIASKAGLLYMGVELDAMKAVADAHSKRSLKDFEDALKTYQAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEISHISDLIGLPMETVEKKLSQMILEKKFAGTLDQ
B8LQ67_______________PRIMGIIHECGGKMHMAERQWAEAATDFFEAFKNYDEAGNHRRIQCLKYLVLANMLMES--EVNPFDGQEAKPYKNDPEILAMTNLVAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRVHGHIDQ

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
183	88	11			0.923564
185		88		11	0.923564
187		88	11		0.923564
190	10	90			0.90298
191	90	10			0.90298
192		10	90		0.90298
194	90			10	0.90298
195		90	10		0.90298
196		30	70		1.0
204	10		90		0.90298
205		90	10		0.90298
255			75	25	1.0
256	25			75	1.0
257	25	25		50	1.0
493			14	85	0.993533
494		14		85	0.993533
495	14			85	0.993533
496			14	85	0.993533
499		85	14		0.993533
503		14		85	0.993533
504	14			85	0.993533
505		85	14		0.993533
507	71	14			0.984337
510	85		14		0.993533
512		85		14	0.993533
513		14		85	0.993533
515	85	14			0.993533
566			83	16	0.994512
568	83			16	0.994512
569		83		16	0.994512
570	83	16			0.994512
571	83		16		0.994512
614	20	80			0.995493
735		10	90		0.90298
738		10		90	0.90298
739	90		10		0.90298
740			90	10	0.90298
743		10	90		0.90298
744		10	90		0.90298
745		90		10	0.90298
749	90	10			0.90298
752	90			10	0.90298
753		10		90	0.90298
755	90	10			0.90298
756			90	10	0.90298
758	10			90	0.90298
771	7	14		78	0.999974
772	78	7	14		0.999974
776	85			14	0.999981
777			14	85	0.999981
778	14			85	0.999981
779		14		85	0.999981
780	85	14			0.999981
786		14	85		0.999981
787	85			14	0.999981
791	85	14			0.999981
951	11	88			0.923564
952	88	11			0.923564
1058		28	71		1.0
1059	71		28		1.0
1064		28		71	1.0
1065			71	28	1.0
1067		71	28		1.0
1073		28	71		1.0
1074	28			71	1.0
1083			14	85	0.993533
1086	85			14	0.993533
1087	85		14		0.993533
1089		14	85		0.993533
1090		14	85		0.993533
1091		85		14	0.993533
1092	85			14	0.993533
1097			14	85	0.993533
1098			85	14	0.993533
1100	14			85	0.993533
1103	85	14			0.993533
1104	14			85	0.993533
1364		88	11		0.923564
1365	11			88	0.923564
1367	88	11			0.923564
1368			88	11	0.923564
1369	88			11	0.923564
1370			11	88	0.923564
1372	88	11			0.923564
1374	28		14	57	1.0
1376		14		85	0.993533
1377	14		85		0.993533
1378		14	85		0.993533
1379	85			14	0.993533
1380		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain