SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7420

Length: 593 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7420

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27570	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	transmembrane protein G1P-related 1 [Arabidopsis thaliana] gb\|AAB18126.1\| G1p [Arabidopsis thaliana] gb\|AAC14406.1\| putative transmembrane protein G1p [Arabidopsis thaliana] gb\|AAO42853.1\| At3g51790 [Arabidopsis thaliana] dbj\|BAE99476.1\| Cytochrome C Matu	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	74%
Blast2go	cytochrome c-type biogenesis protein	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	CcmE/CycJ protein	IPR004329	-	0.0	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
137	66	16		16	0.988813
139	66			33	1.0
141	16			66	0.988813
142		16	83		0.994512
143		66		33	1.0
144		16	16	66	0.988813
146		16		83	0.994512
149			16	83	0.994512
150			16	83	0.994512
154		83		16	0.994512
159	16		83		0.994512
330	80	20			0.995493
331	80		20		0.995493
335		80		20	0.995493
336		80	20		0.995493
337	20			80	0.995493
343			20	80	0.995493
344		20		80	0.995493
345	80			20	0.995493
352			80	20	0.995493
353		20	80		0.995493
354	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain