SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7372

Length: 483 nt

UniGene Fasta

>uagpf_v2_unigene7372
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAGTCTCAGATTGTGAATGCTGGAAGGGAGCGGGGGGATGTTGCAAGCGATAATGAGCACTCGAAGAGGCCGTTGCCTTCGAATGCCGATGGAGCAGTGAGTCATCATTCAACGAGCCATCATTTCAATGAGTAGTACTTCTAGTACCAGCCCTACTTCTACTTCTGCTCCTCGTCCTGCCTCCTCCCCTTCGTCCTCATCTCTTAGAAGGTTTCAAGGGAAGGATGCACTGTCGTATGCCAATATACTGCGATCGAGGAATAAGTTTGCGGATGCACTTGGTCTGTATGAAACTGTTCTGGAAACAGAGCCTACCAATGTCGAGGCTCACATTGGAAAAGGAATTTGTCTCCAAATGCAAAGTGCTATTCCGAAGGCATTTGAATGCTTTGCCGAAGCTATTGCGCTTGATCCTCAGAATGCTTGTGCTCTCACGCACTGTGGAG

Ace file of the UniGene uagpf_v2_unigene7372

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19814	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	SPINDLY n=1 Tax=Sinningia speciosa RepID=B5AY31_9LAMI	-	-	81%
FL-Next	sp=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of gibberellic acid mediated signaling pathway	GO:0009938	Biological Process	87%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%
Blast2go	regulation of reactive oxygen species metabolic process	GO:2000377	Biological Process	87%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q96301

Fln msg: Distance to subject end: 796 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 106 - 914

Fln protein: MSSTSSTSPTSTSAPRPASSPSSSSLRRFQGKDALSYANILRSRNKFADALGLYETVLETEPTNVEAHIGKGICLQMQSAIPKAFECFAEAIALDPQNACALTHCG

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAGTCTCAGATTGTGAATGCTGGAAGGGAGCGGGGGGATGTTGCAAGCGATAATGAGCACTCGAAGAGGCCGTTGCCTTCGAATGCCGATGGAGCAGTGAGTCATCATTCAACGAGCCATCATTTCA_-_ATGAGTAGTACTTCTAGTACCAGCCCTACTTCTACTTCTGCTCCTCGTCCTGCCTCCTCCCCTTCGTCCTCATCTCTTAGAAGGTTTCAAGGGAAGGATGCACTGTCGTATGCCAATATACTGCGATCGAGGAATAAGTTTGCGGATGCACTTGGTCTGTATGAAACTGTTCTGGAAACAGAGCCTACCAATGTCGAGGCTCACATTGGAAAAGGAATTTGTCTCCAAATGCAAAGTGCTATTCCGAAGGCATTTGAATGCTTTGCCGAAGCTATTGCGCTTGATCCTCAGAATGCTTGTGCTCTCACGCACTGTGGAG

Fln Alignment:

Contig7372___QGKDALSYANILRSRNKFADALGLYETVLETEPTNVEAHIGKGICLQMQSAIPKAFECFAEAIALDPQNACALTHCG
Q96301_______________QGNDTLSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
16		75		25	0.996473
21		25	75		0.996473
23		25	75		0.996473
30		25	75		0.996473
31	25	75			0.996473
32	25			75	0.996473
157	80		20		0.995493
160	80		20		0.995493
162			20	80	0.995493
163	20			80	0.995493
165	80	20			0.995493
166	80			20	0.995493
171	80			20	0.995493
176		20	80		0.995493
178	80	20			0.995493
179	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain