SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7330

Length: 419 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene7330
CGTCGTGACCTTGGCTGTCACTCAACTCGCCGCCTCGAACGGTTTCTTTTCTCCACGGTTTCTCCGCCAATTGCCGGGCACGAGTTCAATCCTCTGAGGGCCGGCCTTCTGATCAAGCAACCAGCCATGGATGTCGCTCGAGCTTTCACCAAAGACGTAAAACGCGTCATAGTAAAGGTTGGAACATCTGTTGTCACTAGGCCAGATGGAAGACTTGCACTGGGCCGCCTTGGCTCATTATGTGAGCAGGTAAAGGAAATGGTATCTGAGGGTTTTGAAGTTTTGCTTGTAACCTCAGGTGCAGTTGGTGTTGGAAGACAGAAACTTCGGTATCAGCGACTAATTAATAGCAGCTTTGCAGATCTTCAAAAGCCTCAGCTTGAACTTGATGGAAAGCCATGTGCTGCTGTTGGTCAGAG

Ace file of the UniGene uagpf_v2_unigene7330 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2494	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Pyrroline-5-carboxylate synthetase n=1 Tax=Gossypium arboreum RepID=B1A2U9_GOSAR	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	pyrroline-5-carboxylate synthetase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate 5-kinase.	EC:2.7.2.11	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Arginine and proline metabolism	00330		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Glutamate-5-semialdehyde dehydrogenase.	EC:1.2.1.41	-	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	86%
Blast2go	Metabolic pathways	01100		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	86%
Blast2go	proline biosynthetic process	GO:0006561	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	glutamate 5-kinase activity	GO:0004349	Molecular Function	86%
Blast2go	glutamate-5-semialdehyde dehydrogenase activity	GO:0004350	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Gamma-glutamyl phosphate reductase GPR	IPR000965	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Glutamate/acetylglutamate kinase	IPR001057	-	-
Sma3	Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase	IPR005715	-	-
Sma3	Delta l-pyrroline-5-carboxylate synthetase	IPR005766	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR17

Fln msg: Distance to subject end: 651 aas, your sequence is shorter than subject: 97 - 749

Fln protein: MDVARAFTKDVKRVIVKVGTSVVTRPDGRLALGRLGSLCEQVKEMVSEGFEVLLVTSGAVGVGRQKLRYQRLINSSFADLQKPQLELDGKPCAAVGQ

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCGCCGCCTCGAACGGTTTCTTTTCTCCACGGTTTCTCCGCCAATTGCCGGGCACGAGTTCAATCCTCTGAGGGCCGGCCTTCTGATCAAGCAACCAGCC_-_ATGGATGTCGCTCGAGCTTTCACCAAAGACGTAAAACGCGTCATAGTAAAGGTTGGAACATCTGTTGTCACTAGGCCAGATGGAAGACTTGCACTGGGCCGCCTTGGCTCATTATGTGAGCAGGTAAAGGAAATGGTATCTGAGGGTTTTGAAGTTTTGCTTGTAACCTCAGGTGCAGTTGGTGTTGGAAGACAGAAACTTCGGTATCAGCGACTAATTAATAGCAGCTTTGCAGATCTTCAAAAGCCTCAGCTTGAACTTGATGGAAAGCCATGTGCTGCTGTTGGTCAGAG

Fln Alignment:

Contig7330___MDVARAFTKDVKRVIVKVGTSVVTRPDGRLALGRLGSLCEQVKEMVSEGFEVLLVTSGAVGVGRQKLRYQRLINSSFADLQKPQLELDGKPCAAVGQ
B8LR17_______________MDPSRAFVKNAKRVIIKVGTAVVTRANGGLALGRLGSLCEQVKELMSFGLEVILVTSGAVGIGRQRLRYQRLINSSFVDLQKPQVELDGKPCAAVGQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
229	85		14		0.993533
231	85	14			0.993533
232	14		85		0.993533
234			14	85	0.993533
237		14		85	0.993533
238	14	85			0.993533
240	85		14		0.993533
243		85	14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain