SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7318

Length: 478 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene7318
CGTCGTGACCTTGGCTGTCACTCAATCTCTTTTCTCGTCTTGGGCGGTCTATCAATTGGGTTGAAGAAAAAGCTGAAGAAGTTGCATTTTTGCAGCATTTGTTGATTTGCGTCGTGACCTTGGCTGTCACTCATTTTAGGCCGCCTTTTGATCTAGATCTCTAAGTCTTCATATCGGTTTTTAATCTGGGTGTGGCTTCTTTTGAAGACTGGATAAGGCATACATTGCATTCCTGGATCTGAAGTTGGTACTTGGAAGCTTTTGGACTTGGGTCTCTGGAATTTTGGTTGATTATATGCCTTGGACAGTGTTGGGCTTCTTCGAATTGAGGTCGTTTTGCCCTTAATTTGCTTTGAAGAAGGCGAGGAAACATCAAGGAAGCGAAATGGCCGCACCCAAGCCCGAGGACATCACTCATCCACCAATGGAACAACTGCCAGGCCTGGAATACTGCATAGACTCTAACCCCTCCGTCGGC

Ace file of the UniGene uagpf_v2_unigene7318 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene136	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleobase ascorbate transporter n=6 Tax=rosids RepID=B9H2G7_POPTR	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	nucleobase ascorbate transporter	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	89%
Blast2go	transporter activity	GO:0005215	Molecular Function	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: Distance to subject end: 493 aas, your sequence is shorter than subject: 31 - 524

Fln protein: MAAPKPEDITHPPMEQLPGLEYCIDSNPSVG

Protein Length: 32

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCTTTTCTCGTCTTGGGCGGTCTATCAATTGGGTTGAAGAAAAAGCTGAAGAAGTTGCATTTTTGCAGCATTTGTTGATTTGCGTCGTGACCTTGGCTGTCACTCATTTTAGGCCGCCTTTTGATCTAGATCTCTAAGTCTTCATATCGGTTTTTAATCTGGGTGTGGCTTCTTTTGAAGACTGGATAAGGCATACATTGCATTCCTGGATCTGAAGTTGGTACTTGGAAGCTTTTGGACTTGGGTCTCTGGAATTTTGGTTGATTATATGCCTTGGACAGTGTTGGGCTTCTTCGAATTGAGGTCGTTTTGCCCTTAATTTGCTTTGAAGAAGGCGAGGAAACATCAAGGAAGCGAA_-_ATGGCCGCACCCAAGCCCGAGGACATCACTCATCCACCAATGGAACAACTGCCAGGCCTGGAATACTGCATAGACTCTAACCCCTCCGTCGGC

Fln Alignment:

Contig7318___MAAPKPEDITHPPMEQLPGLEYCIDSNP
B8LQ21_______________MAAPKLEDITHPPMEQLPGLEYCIDSNP

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
237			14	85	0.993533
241	85			14	0.993533
242			14	85	0.993533
243	14	85			0.993533
247		14	85		0.993533
250			14	85	0.993533
252		85		14	0.993533
253	85	14			0.993533
255		14		85	0.993533
259		14		85	0.993533
291		66		33	1.0
295			33	66	1.0
297	66		33		1.0
299	66	33			1.0
301	66		33		1.0
304	33		66		1.0
306			33	66	1.0
307	60		40		1.0
309		40	60		1.0
311	60	40			1.0
315			40	60	1.0
352	66	33			0.997452
356	33		66		0.997452
357	33	66			0.997452
359	66			33	0.997452
362	33		66		0.997452
370		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain