SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7261

Length: 1037 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7261

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9539	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	homogentisate solanesyltransferase [Arabidopsis thaliana] ref\|NP_001189865.1\| homogentisate solanesyltransferase [Arabidopsis thaliana] gb\|AAF23211.1\|AC016795_24 hypothetical protein [Arabidopsis thaliana] dbj\|BAB03105.1\| unnamed protein product [Arabidop	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	49%
Blast2go	homogentisate solanesyltransferase	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	65%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, TRAF-type	IPR001293	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7TI86

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 222 - 366

Fln protein: MDSSSLSRETSPPGSDSGVGGSGRPSEAIGYSPARLFSCDYYEVEHVRNIAQALLSGLAAACVESTMGDLFKTPASVAANVRKEMIEYLRQQSEVYPTQYVMIVGNSGSPEIPVDVVGDLLDNFVHDKRNLFTRMSGWLLSEQKEDKVDDFVEELETMGFWVKGRRENLAKDLLRSIDLSNAYHCEMKFDSSEELALHKSKCPLRPVNCANEGCREVFSSLY

Protein Length: 223

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAGTTGAAGTAGAAATATGAGAAGAGTTTCATGAAGCCGGGCGTCGTGACCTTGGCTGTCACTCATTTCTAGTATGACGGAGGCCAGGCTTGGTTGACATCAAGTTGGTCAATTTGTATATTTGTGAGCACATTTTGAACACGATAGCAATGCTTGCGACAGAGTGGCTAATGCAGGGGCCCTATAGGTTTCAGAAATATATGATGGACACCTTGAAGGTTGAACTCCAAAATTTCGAAGTTGTTTCTAAAATATAGTGTTTTACAGAAGTTATTAGGTCTTGATGTTTCTGATGAGCACGATCTGCTGCTGAGGGGGGTTTAAGAATATCCATTAGGTAGCATTT_-_ATGGATTCATCAAGTCTGTCTAGAGAAACTAGTCCACCTGGTTCAGATTCAGGTGTGGGTGGAAGTGGAAGACCAAGTGAAGCAATTGGATATAGTCCTGCACGGTTGTTTTCATGTGATTACTATGAAGTAGAGCATGTCCGTAATATTGCACAAGCCTTGCTTTCAGGCTTGGCCGCTGCATGTGTGGAAAGTACCATGGGAGACCTCTTCAAGACTCCGGCATCTGTAGCTGCCAATGTGAGGAAGGAAATGATTGAATATCTTCGGCAACAGAGTGAAGTCTATCCTACACAATATGTGATGATTGTCGGAAATTCGGGCTCTCCAGAAATCCCTGTTGATGTGGTTGGTGACCTGCTTGATAACTTTGTGCACGATAAGCGAAATTTATTTACCAGGATGTCTGGCTGGCTTCTCAGTGAACAGAAGGAAGACAAGGTTGATGACTTTGTTGAAGAACTGGAGACAATGGGGTTTTGGGTGAAGGGGCGAAGAGAAAATTTAGCAAAGGATCTCTTGAGGAGCATTGACCTGAGCAATGCCTACCACTGCGAGATGAAGTTTGACTCTAGTGAAGAACTTGCCTTGCACAAAAGTAAGTGCCCCCTGCGACCTGTAAATTGTGCAAACGAGGGATGCAGGGAAGTATTTTCTTCCTTGTAT

Fln Alignment:

Contig7261___FSCDYYEVEHVRNIAQALLSGLAAACVESTMGDLFKTPASVAANVRKEMIEYLRQQSEVYPTQYVMIVGNSGSP--EIPVDVVGDLLDNFVHDKRNLFTRMSGWLLSEQKEDKVDDFVEELETMGFWVKGRRENLAKDLLRSIDLSNAYHCEMKFDSSEELALHKSKCPLRPVNCANEGCREVFSSLY
D7TI86_______________FPCDFFDTEIVHKIAQALLPGLASACVDNTTGDLFRSPASVAVDIRKEMVEYLTQRSESFVAESVILEDGPDTEVSDHPFDIISDFVDDFASSKRNLFSRVSGWLLSERREDKIDDFVQEMEINSFWLLDRRAAIAQTLLKNADFKNTFHCNMNFSSAEELDEHRSNCSFRSMNCMNEGCNSSFCAAH

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
243		25	75		0.996473
246		25		75	0.996473
249	75			25	0.996473
250		75	25		0.996473
251	25			75	0.996473
254	25			25	0.995533
255	75			25	0.996473
256	75		25		0.996473
257	75		25		0.996473
258	75	25			0.996473
260			25	75	0.996473
263	25		75		0.996473
264	75	25			0.996473
265	75			25	0.996473
266		25	75		0.996473
267	25			75	0.996473
359	85	14			0.993533
360			14	85	0.993533
362	85	14			0.993533
364			85	14	0.993533
365			14	85	0.993533
367		14	85		0.993533
369	85			14	0.993533
371			14	85	0.993533
372			14	85	0.993533
373	85	14			0.993533
376		14	85		0.993533
378		14		85	0.993533
755	75	25			0.996473
757		75		25	0.996473
760	75	25			0.996473
761	75	25			0.996473
764			25	75	0.996473
765	75		25		0.996473
766		25		75	0.996473
768			25	75	0.996473
769	75			25	0.996473
771	25	75			0.996473
772	75	25			0.996473
773			75	25	0.996473
774		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain