SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7211

Length: 916 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7211

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15978	25/25

Source	Descriptions	Term	Type	Identity
AutoFact	syntaxin [Glycine max]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	syntaxin	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	88%
Blast2go	regulation of cell shape during vegetative growth phase	GO:0000903	Biological Process	88%
Blast2go	amyloplast organization	GO:0009660	Biological Process	88%
Blast2go	negative gravitropism	GO:0009959	Biological Process	88%
Blast2go	vacuole organization	GO:0007033	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
16		75		25	0.996473
21		25	75		0.996473
23		25	75		0.996473
28	25			75	0.996473
31		25	75		0.996473
36			60	40	1.0
39	60	40			1.0
40		60		40	1.0
42		60		40	1.0
43	40	40			1.0
294			50	50	1.0
354	44		55		1.0
363	87			12	0.992554
364	87			12	0.992554
365	87	12			0.992554
366	87		12		0.992554
367		12		87	0.992554
403		75		25	0.996473
404		25		75	0.996473
406		25		75	0.996473
434	75	25			0.996473
436	75			25	0.996473
438		75	25		0.996473
439		75		25	0.996473
441	25			75	0.996473
443		25		75	0.996473
444		75		25	0.996473
445	50		25	25	0.995533
449		75		25	0.996473
524		85	14		0.993533
525	85			14	0.993533
526	85	14			0.993533
530		14		85	0.993533
531	85	14			0.993533
532		85		14	0.993533
534		85	14		0.993533
536	85			14	0.993533
538	85	14			0.993533
834	75			25	0.996473
835			75	25	0.996473
836		75		25	0.996473
837	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain