SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7188

Length: 569 nt

UniGene Fasta

>uagpf_v2_unigene7188
CGTCGTGACCTTGGCTGTCACTCAAGGTTAGAGGGAAATGGGTTTAGCAATGGAGGGAACAGATTGACTGCAATCTCTCCTTGCTGAATCCCAAGGCTTCGGAGATTTTTAGGAGGTTCTAGGGTTTTGATTTAGGGTTTGGAGGTTTTGCTGGACAGAAATGGGGTCGGTGACCTCTTCCATGGCTGCCAAATTTGCGTTTTTTCCGCCAAATCCCCCGTCATACAAGATAACTCAGGACGAAGTCACAAAGCGGTTGACAATGACGGACGTTCCGCAAAGGGAGAATGTGGATGTCTTGAAGCTGCCGACGAGGAGAGGTCAGGAGATCGTGGCGATCTATGTGCGCAATCCTCTGGCGTCATTGACGGTCTTGTATTCGCATGGTAATGCTGCCGATTTGGGCCAGATGTACGAGCTTTTTGCCGAGTTAAGCGCTCATCTCCGCGTAAATCTGATGGGGTATGACTATTCTGGTTATGGACAGTCAAGTGGGAAGCCAAGTGAGCACAATACTTATGCCGATATTGAAGCAGCCTTCGCAGTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene7188

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8097	13/14

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1073 Hydrolases of the alpha/beta superfamily	-	-	1.0e-30	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	abhydrolase domain-containing protein fam108c1-like	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	80%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV43

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 136 - 384

Fln protein: MGSVTSSMAAKFAFFPPNPPSYKITQDEVTKRLTMTDVPQRENVDVLKLPTRRGQEIVAIYVRNPLASLTVLYSHGNAADLGQMYELFAELSAHLRVNLMGYDYSGYGQSSGKPSEHNTYADIEAAFAVSDSQGHD

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTAGAGGGAAATGGGTTTAGCAATGGAGGGAACAGATTGACTGCAATCTCTCCTTGCTGAATCCCAAGGCTTCGGAGATTTTTAGGAGGTTCTAGGGTTTTGATTTAGGGTTTGGAGGTTTTGCTGGACAGAA_-_ATGGGGTCGGTGACCTCTTCCATGGCTGCCAAATTTGCGTTTTTTCCGCCAAATCCCCCGTCATACAAGATAACTCAGGACGAAGTCACAAAGCGGTTGACAATGACGGACGTTCCGCAAAGGGAGAATGTGGATGTCTTGAAGCTGCCGACGAGGAGAGGTCAGGAGATCGTGGCGATCTATGTGCGCAATCCTCTGGCGTCATTGACGGTCTTGTATTCGCATGGTAATGCTGCCGATTTGGGCCAGATGTACGAGCTTTTTGCCGAGTTAAGCGCTCATCTCCGCGTAAATCTGATGGGGTATGACTATTCTGGTTATGGACAGTCAAGTGGGAAGCCAAGTGAGCACAATACTTATGCCGATATTGAAGCAGCCTTCGCAGTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig7188___MGSVTSSMXXXXXXXXXXXXSYKITQDEVTKRLTMTDVPQRENVDVLKLPTRRGQEIVAIYVRNPLASLTVLYSHGNAADLGQMYELFAELSAHLRVNLMXXXXXXXXXXXXKPSEHNTYADIEAAFAVSDSQ
A9NV43_______________MGSVTSSMAAKFAFFPPNPPSYKIIQDEVTGRLVMTDVPQRENVDVLKLLTRRGQEIMAIYVRNPLASLTVLYSHGNAADLGQMYELFAELSAHLRVNLMGYDYSGYGQSSGKPSEHNTYADIEAAYKCLEEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain