SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7179

Length: 761 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7179

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene685	12/13

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor TFIIE alpha subunit [Arabidopsis thaliana] gb\|AAL07078.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20302.1\| unknown protein [Arabidopsis thaliana] gb\|AAR28007.1\| TFIIE-alpha 1 [Arabidopsis thaliana] gb\|AEE27553.1\| trans	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	general transcription factor iie subunit 1-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	75%
Blast2go	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	75%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	75%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	75%
Blast2go	transcription factor TFIIE complex	GO:0005673	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor TFE/TFIIEalpha HTH domain	IPR017919	-	0.0	-
Sma3	Transcription factor TFIIE, alpha subunit	IPR002853	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
253		20	80		0.995493
255	60	20		20	0.99255
256	60	20		20	0.99255
259	60	20	20		0.99255
264		80		20	0.995493
265	80		20		0.995493
266	80		20		0.995493
267	80	20			0.995493
268		80		20	0.995493
269	80		20		0.995493
270	80			20	0.995493
274		20	80		0.995493
278	20	80			0.995493
394	20		80		0.995493
436			88	11	0.923564
438	11	88			0.923564
439	88	11			0.923564
442			88	11	0.923564
443		88	11		0.923564
444			11	88	0.923564
590		87		12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
160	171	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain