SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7165

Length: 516 nt

UniGene Fasta

>uagpf_v2_unigene7165
CGTCGTGACCTTGGCTGTCACTCAATTGTTTACACATCAGGTTGGACGTCATCCATCTAACCACTCTGGTTTGTTTCTCCGAGGTCGAAGGGAAACCGACCGTGCAAAAGTTCTCCCAGTTACATCCTGACTGATACTTCGACGAAACTTGTTTGTGTCTCACAGCTTTCCTCCTGGTTCAGCTGGTGGTGGTGGTGGTGGTGCTTGGATCGATGGCCGACATAGGCGTGGAGAATAAGAGGAAGAAAATCATTATTGACACTGACCCTGGCATAGATGATGCCATGGCAATCTTTTTGGCTCTTCAGTCTCCAGAGGTTGATGTTATTGGTCTCACTACAATTTATGGAAATGTCCGTACAACTTTGGCAACAACAAATGCCCTTCATCTGTTGGAAGTTGCAGGGAGAGAAGATATCCCTGTCGCAGAAGGTTCACACACATCAATCAAGGAAGTTCCAAAGCTGCGAACTGCAGCTTTTGCCCATGGTTCTGATGGCCTTGGGGAGACCAATA

Ace file of the UniGene uagpf_v2_unigene7165

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16589	1/11
SustainPine v2.0	sp_v2.0_unigene24999	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	putative inosine-uridine preferring nucleoside hydrolase, 3'-partial (with alternative splicing) [Oryza sativa Japonica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	probable uridine nucleosidase 2-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inosine nucleosidase.	EC:3.2.2.2	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	81%
Blast2go	inosine catabolic process	GO:0006148	Biological Process	81%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	81%
Blast2go	inosine nucleosidase activity	GO:0047724	Molecular Function	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inosine/uridine-preferring nucleoside hydrolase domain	IPR001910	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKP9

Fln msg: Distance to subject end: 225 aas, your sequence is shorter than subject: 101 - 326

Fln protein: MADIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRTTLATTNALHLLEVAGREDIPVAEGSHTSIKEVPKLRTAAFAHGSDGLGETN

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTTACACATCAGGTTGGACGTCATCCATCTAACCACTCTGGTTTGTTTCTCCGAGGTCGAAGGGAAACCGACCGTGCAAAAGTTCTCCCAGTTACATCCTGACTGATACTTCGACGAAACTTGTTTGTGTCTCACAGCTTTCCTCCTGGTTCAGCTGGTGGTGGTGGTGGTGGTGCTTGGATCG_-_ATGGCCGACATAGGCGTGGAGAATAAGAGGAAGAAAATCATTATTGACACTGACCCTGGCATAGATGATGCCATGGCAATCTTTTTGGCTCTTCAGTCTCCAGAGGTTGATGTTATTGGTCTCACTACAATTTATGGAAATGTCCGTACAACTTTGGCAACAACAAATGCCCTTCATCTGTTGGAAGTTGCAGGGAGAGAAGATATCCCTGTCGCAGAAGGTTCACACACATCAATCAAGGAAGTTCCAAAGCTGCGAACTGCAGCTTTTGCCCATGGTTCTGATGGCCTTGGGGAGACCAATA

Fln Alignment:

Contig7165___MADIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRXXXXXXXXXXXXEVAGREDIPVAEGSHTSIKEVPKLRTAAFAHGSDGLGETN
B8LKP9_______________MGDIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRTTLATTNALHLLEVAGREDIPVAEGSHTSIKEVPKLRFAAFAHGCDGLGEIN

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
170	80		20		0.995493
171			80	20	0.995493
173			20	80	0.995493
175			20	80	0.995493
176	20	80			0.995493
180		83		16	0.994512
193		16		83	0.994512
194	16		83		0.994512
221		14	85		0.993533
224		85		14	0.993533
228	85	14			0.993533
230	85			14	0.993533
445	80		20		0.995493
449	80		20		0.995493
453	80			20	0.995493
456	75		25		0.996473
457	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
184	203	TGG TGG TGG TGG TGG TGG TG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain