SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7110

Length: 391 nt

UniGene Fasta

>uagpf_v2_unigene7110
CGTCGTGACCTTGGCTGTCACTCAGTATTAAGGTCGCAGTGATGGTTAAGAACGAAGATATTGCCAATGTCTCGGCCAACCAGTCATTTGCAGACAAATGGGTGAAGAATAATGTTGTTTACTTCTATCCTGCAACCAGGATCAATATAGTCCTGGTGGGGAATGAAATTTTATCAGACTACTCCAACAACCAGACCTGGTACCAGCTAGTTCCCGCTATGCTGAGAATCAGGCGAGCTCTACTTAGATATAAGCTGCATCATGTCAAGGTAGGAACCCCTTTGGCTATGGATGTGCTCAACACTTCATTTCCTCCATCATCTGGTGCTTTTCGGGATGATGTTGCGGAAACTGTCATGAAACCAATGCTCGAGTTTCTGACTAGAACGAG

Ace file of the UniGene uagpf_v2_unigene7110

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7579	4/5
SustainPine v2.0	sp_v2.0_unigene16988	1/5

Source	Descriptions	Term	Type	Identity
AutoFact	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] gb\|AAF02143.1\|AC009853_3 putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] dbj\|BAC42699.1\| putative beta-1,3-glucanase precursor [Arabidopsis thaliana] gb\|AAO64098.1\| putative g	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	o-glycosyl hydrolases family 17 protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	cation binding	GO:0043169	Molecular Function	73%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAN5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 265 aas, your sequence is shorter than subject: 129 - 462

Fln protein: S*PWLSLSIKVAVMVKNEDIANVSANQSFADKWVKNNVVYFYPATRINIVLVGNEILSDYSNNQTWYQLVPAMLRIRRALLRYKLHHVKVGTPLAMDVLNTSFPPSSGAFRDDVAETVMKPMLEFLTRT

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTAAGGTCGCAGTGATGGTTAAGAACGAAGATATTGCCAATGTCTCGGCCAACCAGTCATTTGCAGACAAATGGGTGAAGAATAATGTTGTTTACTTCTATCCTGCAACCAGGATCAATATAGTCCTGGTGGGGAATGAAATTTTATCAGACTACTCCAACAACCAGACCTGGTACCAGCTAGTTCCCGCTATGCTGAGAATCAGGCGAGCTCTACTTAGATATAAGCTGCATCATGTCAAGGTAGGAACCCCTTTGGCTATGGATGTGCTCAACACTTCATTTCCTCCATCATCTGGTGCTTTTCGGGATGATGTTGCGGAAACTGTCATGAAACCAATGCTCGAGTTTCTGACTAGAACGAG

Fln Alignment:

Contig7110___IKVAVMVKNEDIANVSANQSFADKWVKNNVVYFYPATRINIVLVGNEILSDYSNNQTWYQLVPAMLRIRRALLRYKLHHVKVGTPLAMDVLNTSFPPSSGAFRDDVAETVMKPMLEFLTRT
D5AAN5_______________IKVSVMVKNEDIANVSSNQSFANKWVKNNVVYFYPATRINIILVGNEILSDYSNNQTWYQLVPAMLRIRRALLRYKLHHIKVGTPLAMDVLNTSFPPSSGIFRDDVAETVMKPMLEFLSRT

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
2		25	75		0.996473
126		16		83	0.994512
127	83		16		0.994512
130		83	16		0.994512
135	83	16			0.994512
137		83		16	0.994512
138	83			16	0.994512
141	83		16		0.994512
145	83	16			0.994512
148		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain