SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7084

Length: 789 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7084

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21288	28/30

Source	Descriptions	Term	Type	Identity
AutoFact	splicing factor 3A subunit 1 [Arabidopsis thaliana] ref\|NP_001117289.1\| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp\|Q8RXF1.2\|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj\|BAE98583.1\| putative splicing factor [Arabidopsis t	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	probable splicing factor 3a subunit 1-like	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	ROK	IPR000600	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Peptidase M11, gametolysin	IPR008752	-	-
Sma3	Exocyst complex component Sec10	IPR009976	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Actin-binding FH2	IPR015425	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
35		33		66	0.997452
42	66			33	0.997452
133		57	42		1.0
134	57		14	28	1.0
136	57	14	28		1.0
138	57	28			1.0
141	71			28	1.0
143	28	14		57	1.0
144	57	28		14	1.0
146		85	14		0.993533
147	28	57	14		1.0
148	85	14			0.993533
149	85			14	0.993533
150		85	14		0.993533
183		71		28	1.0
198	87		12		0.992554
201		12		87	0.992554
206			12	87	0.992554
207			12	87	0.992554
214		87		12	0.992554
225	25		75		1.0
480		33		66	0.997452
484	66			33	0.997452
487	66	33			0.997452
489	66		33		0.997452
490	66		33		0.997452
491	66	33			0.997452
492	66			33	0.997452
493			33	66	0.997452
495		33	66		0.997452
498		33	66		0.997452
527			15	84	0.999986
551		72		18	0.999994
573		10		90	0.90298
580		90	10		0.90298
615	88		11		0.923564
641	85		14		0.993533
643		85	14		0.993533
644	14	85			0.993533
645	14	85			0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
42	54	CCT CCT CCT CCT C	13
69	80	CCA CCA CCA CCA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain