SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7080

Length: 768 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene7080 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10070	9/12

Source	Descriptions	Term	Type	Identity
AutoFact	exocyst complex component 7 [Arabidopsis thaliana] emb\|CAC05443.1\| putative protein [Arabidopsis thaliana] gb\|AED91857.1\| exocyst complex component 7 [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	vesicle docking involved in exocytosis	GO:0006904	Biological Process	71%
Blast2go	exocyst	GO:0000145	Cellular Component	71%
Blast2go	pollen tube	GO:0090406	Biological Process	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
226	40			60	1.0
449		81		18	0.999994
457	18			81	0.999994
468		18		81	0.999994
469		72	27		1.0
470	20			80	0.999996
472	90		10		0.90298
475	88	11			0.923564
477	11			88	0.923564
480	88			11	0.923564
481	88	11			0.923564
483		11		88	0.923564
531			42	57	1.0
532			57	42	1.0
534		42	57		1.0
537			57	42	1.0
538	57		42		1.0
539		57		42	1.0
540	57		42		1.0
542	42	57			1.0
543		57		42	1.0
544	57			42	1.0
545	57			42	1.0
546		42	57		1.0
547			57	42	1.0
551	42	57			1.0
552	42		57		1.0
555	42	57			1.0
607			66	33	0.997452
611	66			33	0.997452
612	66		33		0.997452
613	33		66		0.997452
614		33	66		0.997452
615	33			66	0.997452
616			33	66	0.997452
620	33	66			0.997452
621			33	66	0.997452
623	66			33	0.997452
626		33		66	0.997452
628	33			66	0.997452
629	33	33			0.997753
630	33		33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain