SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7013

Length: 1008 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7013

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9891	2/16
SustainPine v2.0	sp_v2.0_unigene11707	10/16
SustainPine v2.0	sp_v2.0_unigene28943	4/16

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuole membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RSQ1_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	snare associated golgi protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	72%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRU2

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 254 - 449

Fln protein: MAQKRLSKKKKPPSMARAETTSLISVLQAEHQKELEELVLTKRPFETLKLFALAIRRDLGCHSYVINRGASFSLLTLLWVALGIMLIMLDGPHEKLVNELRIYLGFIIWWLGLGVASSIGLGSGLHTFVLYLGPHIAFFTLKATQCGRVDLKSALYDTILLNRVPSWIEKDCSEIGPPLYPPFMGSERFRTPLHKILPQVQLEAVLWGIGTALGELPPYFLSRAACLSGKKLEDLEQLNALADESGTMSVLMMR

Protein Length: 255

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGAAAGAAACATATTTAAATTCTTGTATAAACACGTCGTGACCTTGGGTGTCTCTCTATATTTTTTGGTTTCTGTTATGAGTGCCCTTGTATGAATATATGTTTCTGGCACCCTGCAAAACAAAGATATATTTAGAGGTCAACTGATTAACTATACAATCGCTCAATTGGCGGCTTCTTCTTTCTCTTTCTTCCTGTCACAGGTGCTTTTGAACCATC_-_ATGGCTCAAAAGCGTTTATCCAAGAAGAAGAAGCCGCCCAGTATGGCTCGCGCAGAGACCACTTCTCTTATCTCAGTACTGCAGGCAGAGCATCAAAAGGAGCTGGAAGAGTTAGTACTGACAAAACGCCCATTTGAAACGCTGAAGTTATTTGCTTTGGCCATTCGTCGTGACCTTGGCTGTCACTCATATGTCATAAATAGAGGGGCATCTTTCAGTCTTTTGACTCTTCTGTGGGTAGCCCTTGGCATTATGCTAATTATGCTCGATGGACCCCATGAGAAGCTTGTCAATGAGCTCCGTATCTACTTAGGATTTATTATTTGGTGGCTAGGCCTTGGAGTGGCTTCATCAATTGGCTTAGGATCTGGCTTGCACACTTTTGTGCTGTATTTGGGCCCTCATATTGCATTCTTTACATTAAAAGCTACACAATGTGGGCGAGTTGATTTAAAAAGTGCTCTATATGACACTATTCTACTGAACAGAGTGCCGTCATGGATTGAGAAAGACTGCTCGGAGATAGGCCCACCATTATATCCACCTTTTATGGGTTCTGAGCGTTTCAGGACACCTCTTCACAAAATTTTGCCTCAGGTTCAACTGGAAGCTGTTCTGTGGGGAATTGGAACTGCCCTTGGGGAGCTTCCTCCATATTTTCTCTCCAGAGCAGCTTGCTTATCTGGCAAGAAATTAGAAGACCTGGAGCAGTTGAATGCCCTTGCTGATGAAAGTGGAACCATGTCTGTTTTGATGATGCGGCT

Fln Alignment:

Contig7013___SLISVLQAEHQKELEELVLTKRPFETLKLFALAIRRDLGCHS-YVINRGASFSLLTLLWVALGIMLIMLDGPHEKLVNELRIYLGFIIWWLGLGVASSIGLGSGLHTFVLYLGPHIAFFTLKATQCGRVDLKSALYDTILLNRVPSWIEKDCSEIGPPLYPPFMGSERFRTPLHKILPQVQLEAVLWGIGTALGELPPYFLSRAACLSGKKLEDLEQLNA-LADESGTMSVLMMR
B8LRU2_______________SRISRLEMEHQKHLEGLVLTKHPFDTLKIFTLAILEYIKQSAIYAMTHGWLFLLTTLLSLSIGVILLTVNGPHEKHVDELVHYFRFGLWWVGLGVASSIGLGSGLHTFVLYLGPHIAIFTLRATQCGRVDLKSAPYDTIQLNRAPSWIDKSCSDFGSPLFPQLIDSERFRTPLLSILPQVQLEAILWGIGTAIGELPPYFVSRAARLSGRRPEALEELDASFVEGSGFLSVWLMR

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
60		62		37	1.0
62	37			62	1.0
63		62		37	1.0
64			62	37	1.0
68		62		37	1.0
69	37	62			1.0
73		37	25		1.0
74	37	25			1.0
75			75	25	1.0
76		37	62		1.0
78		25	75		1.0
79	25		37	37	1.0
80	37	62			1.0
81	37			62	1.0
83	25	37		37	1.0
85	37			62	1.0
323			22	77	0.999999
331	77			22	0.999999
332			77	22	0.999999
336		12	87		0.992554
414		66		33	0.997452
415			66	33	0.997452
418	33		66		0.997452
420			66	33	0.997452
425			33	66	0.997452
431			33	66	0.997452
434		66	33		0.997452
435	66		33		0.997452
562			25	75	0.996473
636		33		66	1.0
639		33	66		1.0
640		66	33		1.0
643	50			50	1.0
644	50	33		16	1.0
645		33		66	1.0
647			16	83	0.994512
650		50	50		1.0
651		66		33	1.0
652		66	33		1.0
653		50		50	1.0
654		50		50	1.0
655	50	50			1.0
656	50	33		16	1.0
662		83	16		0.994512
663	16	16			0.988813

SSRs (tot: 1)

Start position	End position	Sequence	Length
266	277	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain