SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6982

Length: 1340 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6982

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22804	26/36
SustainPine v2.0	sp_v2.0_unigene31450	8/36

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Picea sitchensis RepID=D5A9W9_PICSI	-	-	99%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	phosphoprotein phosphatase	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	93%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	93%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	93%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	93%
Blast2go	cytoplasm	GO:0005737	Cellular Component	93%
Blast2go	nucleus	GO:0005634	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9W9

Fln msg: Separated hits, possible frame ERROR between 783 and 794,

Fln protein: MELDLWLEKVRGGENLTEDELKLLCDYVKEILVEESNVQPVHSPVTVCGDIHGQFHDLMKLFQTGGQVPDTNYIFMGDFVDRGYNSIEVFTILLLLKARYPAHITLLRGNHESRQITQVYGFYDECQRKYGNANAWRFCTDVFDYLTLSAIIDRRVLCVHGGLSPDVVAxxxxxIIDRHCEIPHEGPFCDLMWSDPEDIDTWAVSPRGAGWLFGCRVTSEFNHINDLELVCRAHQLVQEGLKYMFEDKSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENNSMMGSRTAGAYFL*

Protein Length: 305

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCGCCTTCGAACCAAATAATGAAGATGGATCCTCCCATTCAAATTTAAATAGTGAGGCGTCGTGACCTTGGCTGTCACTCAAACTTTATTTTGAACATAAACAGCTGAATAGCACTGAAAAGTCTCCATTTTCATTGATCCTCTGCAATCCGAGAGAAATAGAGATCGATCCGATCTGGAGATTCGAACGCGGGTTGCTGAAAATCTAAATTTCTTTGTGTCCAGTCCTCCGGAATTCAGTAGTG_-_ATGGAGTTGGACCTATGGCTTGAGAAGGTTAGGGGTGGGGAGAACCTCACAGAGGACGAACTCAAGCTTCTGTGCGATTACGTGAAGGAGATACTGGTGGAGGAATCTAATGTACAGCCTGTTCATAGTCCAGTGACAGTGTGTGGAGACATCCATGGACAATTTCATGATCTAATGAAACTTTTCCAGACAGGAGGTCAGGTGCCGGATACAAATTATATATTTATGGGAGATTTTGTCGATAGAGGATACAACAGCATTGAAGTATTCACGATTCTTTTATTATTAAAAGCAAGATATCCAGCTCATATAACTCTTTTGCGTGGGAATCATGAAAGCAGACAGATAACTCAGGTCTATGGATTTTATGATGAATGCCAGCGAAAATATGGGAATGCAAATGCATGGCGTTTTTGCACTGATGTATTTGATTACCTCACACTGTCAGCAATCATTGATAGACGAGTCCTTTGTGTCCATGGGGGTCTCTCACCTGACGTCGTGGCCTTxxxxxxxxxxxxGATTATTGACAGGCATTGTGAAATACCACATGAAGGACCCTTCTGTGATTTGATGTGGAGTGATCCAGAAGATATTGATACTTGGGCGGTTAGTCCTCGTGGTGCTGGATGGCTTTTTGGGTGCAGAGTAACTTCTGAGTTCAATCACATTAATGACTTGGAACTCGTCTGCCGAGCACATCAACTGGTGCAGGAAGGCCTGAAGTACATGTTTGAAGACAAAAGCTTAGTAACGGTTTGGTCAGCGCCAAATTACTGCTACCGATGTGGCAATGTAGCTTCAATTTTGAGCTTTAACGAGAACATGGAAAGAGATGTGAAATTCTTCACTGAAACCGAGGAGAACAATTCTATGATGGGCTCTCGGACTGCCGGTGCATATTTCTTATAG___AAAATCAATAAATTTGGTTGGTGCATTGTATGATTGTATCATTTGTAAACGATGCTGCATCTTTTCACCTGTAGAGGATATAGATGGAAATTTTGCATCCTACTGTATGTTATAAAGCCCGGCAAATTATTGGGATTCTTGATACGAATTCATTAAG

Fln Alignment:

Contig6982___MELDLWLEKVRGGENLTEDELKLLCDYVKEILVEESNVQPVHSPVTVCGDIHGQFHDLMKLFQTGGQVPDTNYIFMGDFVDRGYNSIEVFTILLLLKARYPAHITLLRGNHESRQITQVYGFYDECQRKYGNANAWRFCTDVFDYLTLSAIIDRRVLCVHGGLSPDVVALxxxxIIDRHCEIPHEGPFCDLMWSDPEDIDTWAVSPRGAGWLFGCRVTSEFNHINDLELVCRAHQLVQEGLKYMFEDKSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENNSMMGSRTAGAYFL
D5A9W9_______________MELDLWLEKVRGGENLTEDELKLLCDYVKEILVEESNVQPVHSPVTVCGDIHGQFHDLMKLFQTGGQVPDTNYIFMGDFVDRGYNSIEVFTILLLLKARYPAHITLLRGNHESRQITQVYGFYDECQRKYGNANAWRFCTDVFDYLTLSAIIDRQVLCVHGGLSPDIRAIxxxxVIDRHCEIPHEGPFCDLMWSDPEDIDTWAVSPRGAGWLFGCRVTSEFNHINDLELVCRAHQLVQEGLKYMFEDKSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENNSMMGPRTGGAYFL

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
86		66		33	0.997452
89	33	66			0.997452
90			66	33	0.997452
91		33		66	0.997452
131	90		10		0.90298
132			90	10	0.90298
137	90	10			0.90298
139	90			10	0.90298
142	90		10		0.90298
147	90			10	0.90298
148	90	10			0.90298
150		10	90		0.90298
154	10	90			0.90298
319		88	11		0.923564
323		88	11		0.923564
324	88			11	0.923564
327		11	88		0.923564
328			88	11	0.923564
329	88			11	0.923564
330		88	11		0.923564
332	88	11			0.923564
333	88			11	0.923564
334		88	11		0.923564
338	88	11			0.923564
339			88	11	0.923564
341	11			88	0.923564
480		20	80		0.995493
481			80	20	0.995493
482	80			20	0.995493
485	80		20		0.995493
826		20		80	0.995493
828	80			20	0.995493
829	80	20			0.995493
835		83		16	0.994512
836			16	83	0.994512
837			16	83	0.994512
842		16	83		0.994512
844		16		83	0.994512
846		16	16	66	0.988813
847	16		83		0.994512
848	83	16			0.994512
853		16	83		0.994512
855		16	83		0.994512
857	16		83		0.994512
868		20		80	0.999996
869	80		20		0.999996
871		20		80	0.999996
873	80			20	0.999996
874			20	80	0.999996
877		20		80	0.999996
879			80	20	0.999996
883			80	20	0.999996
886		20		80	0.999996
888		20	80		0.999996
891	20	80			0.999996
973	81			18	0.999994
975	81		18		0.999994
977		81	18		0.999994
979	81	18			0.999994
989		22	77		0.999999
990			77	22	0.999999
991	77	22			0.999999
1061	83			16	0.994512
1062		16		83	0.994512
1066	16		83		0.994512
1068	83	16			0.994512
1069	83			16	0.994512
1073	83		16		0.994512
1074			83	16	0.994512
1076		16		83	0.994512
1081	20			20	0.99255
1316		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain