SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6973

Length: 997 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6973

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2411	33/33

Source	Descriptions	Term	Type	Identity
AutoFact	TBP-associated factor 13 n=1 Tax=Solanum melongena RepID=F4YY46_SOLME	-	-	88%
FL-Next	tr=TBP-associated factor 13; Solanum melongena (Eggplant) (Aubergine).	-	-	86%
Blast2go	transcription factor tfiid	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	90%
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	90%
Blast2go	transcription from RNA polymerase II promoter	GO:0006366	Biological Process	90%
Blast2go	DNA binding	GO:0003677	Molecular Function	90%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	90%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	90%
Blast2go	transcription factor complex	GO:0005667	Cellular Component	90%
Blast2go	plastid	GO:0009536	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription initiation factor IID, 18kDa subunit	IPR003195	-	0.0	-
Sma3	Histone-fold	IPR009072	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
63			25	75	0.996473
64			75	25	0.996473
65		25	75		0.996473
68			25	75	0.996473
69	25			75	0.996473
72		25	75		0.996473
76			25	75	0.996473
77	75	25			0.996473
79			25	75	0.996473
81		25		75	0.996473
82	25	75			0.996473
86		25	75		0.996473
87	25	75			0.996473
92			75	25	0.996473
279	58		41		1.0
379			16	83	0.994512
385	83	16			0.994512
387		83		16	0.994512
389	83		16		0.994512
391		83		16	0.994512
392		83	16		0.994512
399			83	16	0.994512
451		75		25	0.996473
578		11		88	0.923564
579		11		44	1.0
580	11		44	44	1.0
581			33	66	1.0
586		33	11	55	1.0
587	44			55	1.0
589		11		77	0.968132
590	22			77	0.999999
591		11		88	0.923564
592	11		11	77	0.968132
593	88		11		0.923564
598	88			11	0.923564
599		11	88		0.923564
600	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain