SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6932

Length: 850 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6932

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3559	26/27

Source	Descriptions	Term	Type	Identity
AutoFact	Glycylpeptide N-tetradecanoyltransferase n=1 Tax=Ricinus communis RepID=B9RK90_RICCO	-	-	74%
FL-Next	sp=Glycylpeptide N-tetradecanoyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	glycylpeptide n-tetradecanoyltransferase 1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoethanolamine N-methyltransferase.	EC:2.1.1.103	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	84%
Blast2go	Glycylpeptide N-tetradecanoyltransferase.	EC:2.3.1.97	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylcholine biosynthetic process	GO:0006656	Biological Process	84%
Blast2go	choline biosynthetic process	GO:0042425	Biological Process	84%
Blast2go	embryonic shoot morphogenesis	GO:0010064	Biological Process	84%
Blast2go	methylation	GO:0032259	Biological Process	84%
Blast2go	N-terminal protein myristoylation	GO:0006499	Biological Process	84%
Blast2go	pollen tube growth	GO:0009860	Biological Process	84%
Blast2go	pollen development	GO:0009555	Biological Process	84%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	84%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	84%
Blast2go	phosphoethanolamine N-methyltransferase activity	GO:0000234	Molecular Function	84%
Blast2go	glycylpeptide N-tetradecanoyltransferase activity	GO:0004379	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%
Blast2go	ribosome	GO:0005840	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	Myristoyl-CoA:protein N-myristoyltransferase	IPR000903	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
24	22	77			0.999999
26			22	77	0.999999
30		22	77		0.999999
33		77	22		0.999999
36			77	22	0.999999
39	22			77	0.999999
42		77	22		0.999999
43	77		22		0.999999
45		22		77	0.999999
47	77	22			0.999999
66		25		75	1.0
71	75			25	1.0
75	75	25			1.0
76		75		25	1.0
83	75			25	1.0
319	80			20	0.995493
321			20	80	0.995493
322			80	20	0.995493
329	80		20		0.995493
330		20		80	0.995493
331			75	25	0.996473
334	75			25	0.996473
335	75	25			0.996473
340	25			75	0.996473
430	85		14		0.993533
436	85	14			0.993533
437		14		85	0.993533
440			85	14	0.993533
443		14		85	0.993533
446			85	14	0.993533
447		14		85	0.993533
451		14	85		0.993533
452	14			85	0.993533
544	85	14			0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain