SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6929

Length: 725 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene6929 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16626	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	transducin-like protein [Arabidopsis thaliana] gb\|AAK43883.1\|AF370506_1 putative WD-40 repeat protein [Arabidopsis thaliana] gb\|AAD10153.1\| putative WD-40 repeat protein [Arabidopsis thaliana] gb\|AAM91214.1\| putative WD-40 repeat protein [Arabidopsis thal	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	glutamate-rich wd repeat-containing protein 1	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
38		33	33	33	0.997753
39	33	33		33	0.997753
40			33	66	1.0
41	33			66	0.997452
42	33		66		0.997452
43	33	33	33		0.997753
49	66			33	0.997452
50		33		66	0.997452
52		25		75	0.996473
54		25		75	0.996473
58	80			20	0.995493
316		85		14	0.993533
317		85	14		0.993533
318	14	85			0.993533
319			14	85	0.993533
320		85		14	0.993533
322	14	85			0.993533
324	14			85	0.993533
325			14	85	0.993533
326		14		85	0.993533
328	14			85	0.993533
329	14			85	0.993533
332	85			14	0.993533
333	85	14			0.993533
336		85	14		0.993533
337	14			85	0.993533
338		14		85	0.993533
409	16		83		0.994512
412	16	83			0.994512
413		83	16		0.994512
415		83	16		0.994512
418	83	16			0.994512
420	16		83		0.994512
421		83		16	0.994512
422	83		16		0.994512
424		66	33		1.0
425	66		16	16	0.988813
426	66		16	16	0.988813
427	83	16			0.994512
428	83	16			0.994512
429	83	16			0.994512
431	20	20			0.99255
433	83		16		0.994512
435		80	20		0.995493
436		80	20		0.995493
437	80			20	0.995493
441	80		20		0.995493
443		20		80	0.995493
444		80	20		0.995493
445			50	50	1.0
446	50		50		1.0
449			50	50	1.0
450	50		50		1.0
452	50	50			1.0
455		50	50		1.0
456	50	50			1.0
459			50	50	1.0
460			50	50	1.0
465		50		50	1.0
466			50	50	1.0
468	50	50			1.0
670	33			66	0.997452
675	33		66		0.997452
680			66	33	0.997452
682		66		33	0.997452
687	33			66	0.997452
690		66	33		0.997452
694	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
355	368	TCT TCT TCT TCT TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain