SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6901

Length: 1391 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6901

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3736	30/31

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF493 domain containing protein	-	-	2.0e-17	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0250	IPR007454	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRY2

Fln msg:

Fln protein: MACGIVTGGEVRLRMALTCSSESWVMLMLRRSIKYMNSTPISQVNLRSRLRRSPSVLSHLRCTANYGGNPSPTDQSPPQEAVLKAISEVSKMEGRVAQTRNVVMGGTITGESEDEWKVLDQKVNSYPTVRGFTAIGTGGDDFVQAMVGAVESVLQIPIPEGSVTHKLSSRGKYVSVNIGPVTVVSSDQVQEVYNAMRRDVRMKYFL*

Protein Length: 208

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCCAAAATCATCTGCAATTTTCTTGGCTGTCAAGTTGATGGTCTGGTCTGCTAGAGAAGAAGTATTAAATTATATAACATA_-_ATGGCGTGCGGAATTGTGACTGGAGGTGAAGTAAGATTGAGAATGGCGTTGACATGTTCCTCAGAATCGTGGGTTATGCTTATGCTTAGGCGCTCCATTAAATACATGAATTCAACGCCAATTTCCCAAGTGAATTTGAGGTCCAGGTTACGGCGATCCCCCAGTGTTTTATCACACCTTCGTTGTACTGCTAATTATGGTGGGAATCCTTCTCCGACAGATCAAAGTCCGCCCCAAGAAGCCGTTCTTAAAGCTATTTCAGAGGTCTCAAAAATGGAGGGGAGAGTTGCACAGACTAGAAATGTAGTTATGGGAGGTACAATAACTGGGGAGTCAGAAGATGAATGGAAAGTTTTAGATCAGAAGGTTAATTCTTATCCAACTGTGAGGGGATTTACAGCAATTGGTACTGGAGGGGATGATTTTGTACAGGCGATGGTTGGGGCTGTTGAGTCAGTTCTTCAAATCCCAATCCCCGAGGGTAGCGTGACACATAAGTTGTCATCCAGAGGAAAGTACGTATCTGTAAACATTGGACCTGTGACAGTTGTTTCAAGTGATCAGGTTCAAGAAGTATACAATGCCATGAGGAGAGATGTTCGAATGAAATACTTTTTGTAA___TACATTTTTATTTGGTACATTATTTCAAGATATAAAATATTGCATTGGTCTCCATATTCAATTAATTCATTTTAGTCTTTATACTAGTTGAATATGGTGTAACAGGTTATACAAATTCCTTTTGGCCTATGAGAAGGTTGGTATCATGTTTAGCTACAAAAAAGTTCAACTTTTTATAACTTGTAATCAAAGTATTAAATCTCACTTTGAGATAGTTTTCCATCGATAGAAAAACCTCGGCATCAATAGTTTAGGACTTAGTTTCATATTTGGTTAATTCTTCAAATTTACGTGAACTCAAATATGTCATGAATTGTTTTTGTATTTGTTGTGTACCCTAGGTTAATTCTTGTTTCATACTCTAGTTTAACTCATGTTTGGGAAGTACTAACCATAGGTACTGTGCTATAATGTAACTATCTTCTTGCCCCTCAACATCGAGGGCCATCATACACCATCCGCAACATTGTTTCATCATGCCCTCGTATACCCATGGAGGCTATTTTTGACATGTGACAGAGTGGTCACACATGGATGTTTGAAACAAGTTCTGGCACATTTGCAAGACGATTGTATAGTTTTTTGATGATATATATAGGTTAGTTAAGGTGGAACTCTAACTACACCCATCTTGATGTGAGGGCACCTTGAATGTTGATTAC

Fln Alignment:

Contig6901___MACGIVTGGEVRLRMALTCSSESWVMLMLRRSIKYMNSTPISQVNXXXXXXXXXXXXXXXXCTANYGGNPSPTDQSPPQEAVLKAISEVSKMEGRVAQTRNVVMGGTITGESEDEWKVLDQKVNSYPTVRGFTAIGTGGDDFVQAMVGAVESVLQIPIPEGSVTHKLSSRGKYVSVNIGPVTVVSSDQVQEVYNAMRRDVRMK
A9NRY2_______________MACGAVSGGEVRLRMALTCSSESWVMLMFRRSIKYMNLTPISQVNLRSRLRRSPSVLSHLRCTANYSGNPSPTDQSPPQEAVLKAISEVSKMEGRVAQTRNVVMGGTITGESADEWKVLDQKVNSYPTVRGFTAIGTGGDDFVQAMVGAVESVLQIPIPEGSVTHKLSSRGKYVSVNIGPVTVVSSDQVQAVYNAMRRDVRMK

SNPs (tot: 106)

Position	A %	C %	G %	T %	Probability
43		33		66	1.0
45		66		33	1.0
46	66	33			1.0
47	66		33		1.0
49			33	66	1.0
50	33			66	1.0
51		33		66	1.0
395		33	66		1.0
396	66	16		16	0.988813
397		16	66	16	0.988813
398	16			83	0.994512
399			16	83	0.994512
400			83	16	0.994512
402	83			16	0.994512
403		83	16		0.994512
404	83			16	0.994512
405		16	83		0.994512
409	83	16			0.994512
410	16		83		0.994512
441			83	16	0.994512
442		16	83		0.994512
443	66		33		1.0
444		16	66	16	0.988813
449	80	20			0.995493
455	80	20			0.995493
456	80		20		0.995493
459			80	20	0.995493
460	80		20		0.995493
462	80	20			0.995493
463		20	80		0.995493
466			20	80	0.995493
467			20	80	0.995493
468	80	20			0.995493
469			80	20	0.995493
470	80		20		0.995493
474			80	20	0.995493
475	80	20			0.995493
526		10	70	10	0.922578
528			80	20	0.999996
529		20	80		0.999996
530	90		10		0.90298
532	10		90		0.90298
534		10		90	0.90298
535		10		90	0.90298
540	90		10		0.90298
542	90			10	0.90298
544			90	10	0.90298
549		10	90		0.90298
550			90	10	0.90298
551		10		90	0.90298
552	10			90	0.90298
806	83	16			0.994512
810			16	83	0.994512
812			16	83	0.994512
814		16		83	0.994512
815	83	16			0.994512
816		83		16	0.994512
818	83		16		0.994512
822		16	83		0.994512
824	83	16			0.994512
837		16	83		0.994512
840		16		83	0.994512
841	83		16		0.994512
846	83	16			0.994512
847	83			16	0.994512
849			16	83	0.994512
850		83	16		0.994512
854		16		83	0.994512
855	16			83	0.994512
856		16	83		0.994512
857			83	16	0.994512
859	16	83			0.994512
878	85		14		0.993533
880		16	83		0.994512
881			20	80	0.995493
883			20	80	0.995493
885		20	80		0.995493
888	80			20	0.995493
889		80	20		0.995493
890	75		25		0.996473
891	75	25			0.996473
892	75			25	0.996473
893	75		25		0.996473
894	75			25	0.996473
895	75	25			0.996473
896	25		75		0.996473
897		25		75	0.996473
1010	83	16			0.994512
1011			16	83	0.994512
1014			16	83	0.994512
1016		83	16		0.994512
1018	83	16			0.994512
1019	83	16			0.994512
1022			16	83	0.994512
1023	83		16		0.994512
1028	83	16			0.994512
1038		14		85	0.993533
1042	85		14		0.993533
1046	85	14			0.993533
1051			16	83	0.994512
1053		16		83	0.994512
1054	16			83	0.994512
1055		16	83		0.994512
1106	50	50			1.0
1154	50	50			1.0
1212		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain