SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6820

Length: 310 nt

UniGene Fasta

>uagpf_v2_unigene6820
CGTCGTGACCTTGGCTGTCACTCAAGGTTGAAAGAGACACTTGTAAAGTTGCGTTCCAGTCGCAATTTTCGTCGTGACCTTAGGCTGTCACTCATAATATTGGGGATTGCAGCATATCTATACAATGCCTTAAAGTAGGAGCAGAACGCAGTTTTCTTGATACTAGAGAAGACAAAAGCAATCACTTCTTGACAGAGTTTGTATGATCTAAACGTTGTTTCTATACTGCTTGCACTTCTCAGAGAAAATCTAGAACCCTACACTGGAGTTCATATTATCTGTATATATATCAAAGATGTACTGACTCTTC

Ace file of the UniGene uagpf_v2_unigene6820

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4406	7/9

Source	Descriptions	Term	Type	Identity
AutoFact	putative syntaxin 71 (SYP71) [Oryza sativa Japonica Group]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	syntaxin-71	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to membrane	GO:0006612	Biological Process	80%
Blast2go	SNAP receptor activity	GO:0005484	Molecular Function	80%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Histone chaperone, ASF1-like	IPR006818	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8W2

Fln msg: your sequence is shorter than subject: 46 - 252

Fln protein: RRDLGCHSRLKETLVKLRSSRNFRRDLRLSLIILGIAAYLYNALK*

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTGAAAGAGACACTTGTAAAGTTGCGTTCCAGTCGCAATTTTCGTCGTGACCTTAGGCTGTCACTCATAATATTGGGGATTGCAGCATATCTATACAATGCCTTAAAGTAG___GAGCAGAACGCAGTTTTCTTGATACTAGAGAAGACAAAAGCAATCACTTCTTGACAGAGTTTGTATGATCTAAACGTTGTTTCTATACTGCTTGCACTTCTCAGAGAAAATCTAGAACCCTACACTGGAGTTCATATTATCTGTATATATATCAAAGATGTACTGACTCTTC

Fln Alignment:

Contig6820___RLKETLVKLRSSRNFRRDLRLSLIILGIAAYLYNALK
D5A8W2_______________RLKDTVNKLRSSRNFCIDIILLCIILGIAAYLYNVLK

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
70		75		25	0.996473
73	25	75			0.996473
74			75	25	0.996473
78		60		40	1.0
79	40	60			1.0
83			60	40	1.0
84	40		60		1.0
90	60			40	1.0
91		60		40	1.0
93		20	40		1.0
94	20	80			0.995493
96	20			60	0.99255
98	80			20	0.995493
100	83	16			0.994512
101			16	83	0.994512
103		16	83		0.994512
105			83	16	0.994512
112	83			16	0.994512
116		11		77	0.968132
117	77	11	11		0.968132
120			11	88	0.923564
121	88			11	0.923564
122			11	88	0.923564
125	88	11			0.923564
126	88			11	0.923564
129		88	11		0.923564
133	88	11			0.923564
135	88	11			0.923564
136			88	11	0.923564
137		11		88	0.923564
308		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain