SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6816

Length: 1041 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6816

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6752	19/28
SustainPine v2.0	sp_v2.0_unigene34385	7/28
SustainPine v2.0	sp_v2.0_unigene72582	2/28

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA oxidase [Glycine max]	-	-	75%
FL-Next	sp=Acyl-coenzyme A oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	peroxisomal acyl- oxidase 1a	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		87%
Blast2go	Valine, leucine and isoleucine degradation	00280		87%
Blast2go	beta-Alanine metabolism	00410		87%
Blast2go	Propanoate metabolism	00640		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Biosynthesis of secondary metabolites	01110		87%
Blast2go	Cytochrome-c oxidase.	EC:1.9.3.1	-	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Oxidative phosphorylation	00190		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Acyl-CoA oxidase.	EC:1.3.3.6	-	87%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	87%
Blast2go	alpha-Linolenic acid metabolism	00592	87%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	87%
Blast2go	Biosynthesis of plant hormones	01070	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	response to fungus	GO:0009620	Biological Process	87%
Blast2go	response to wounding	GO:0009611	Biological Process	87%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	87%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	87%
Blast2go	pollen development	GO:0009555	Biological Process	87%
Blast2go	defense response to insect	GO:0002213	Biological Process	87%
Blast2go	long-chain fatty acid metabolic process	GO:0001676	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	87%
Blast2go	cytochrome-c oxidase activity	GO:0004129	Molecular Function	87%
Blast2go	acyl-CoA oxidase activity	GO:0003997	Molecular Function	87%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	87%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA oxidase	IPR012258	-	-
Sma3	Acyl-CoA oxidase, C-terminal	IPR002655	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3		IPR013764	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR5

Fln msg: Distance to subject end: 429 aas, your sequence is shorter than subject: 234 - 660

Fln protein: MANADQLAHERKKAQFDVGALKVVWAGSQHALQISDRMAKLVASDPVFLKDDRPRLSRKELFRKTLNKAAHAWKLIVDLRLSEEEASSLRFFVDEPAYTDLHWGMFIPAIKGQANEEQQQEWLPLANKMQIIGCYAQTEMGHGSNVQGLETTATFDPNTDEFVLNSPTLTSTKWWPGGLGKVSTHAIVYARLITDGQDYGVHGFIVQIRSLEDHQSLPGVTVADIGMKFGKWCI

Protein Length: 235

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTCGTCGTGGCGTTGGCTTTCCTTGGCTTTGGCTTTGGCTTTCGATGTAGTATTTTTGCAAACTGATTCAAAACGTCTGCACAGAGGACATCCATTTTGCATACTAAGAATAGAATTGGATTATCCAATAATTTCGCTTGTGAGATTCTTACCTAATCGTCAGCTACCCCCACACATTCAATTAATGCCATCAACGCCTGGAAAACTATTTTCTCTTTCCTATAAATTGCTCTTATTCCTTTAGCTTTCTTTCACGATCTACTATTGCGGTGGTGCCTTTGTTTTGATTAGCTCTGCTCTGCTCACGAGA_-_ATGGCGAATGCGGATCAGCTAGCTCACGAGAGGAAGAAGGCCCAATTCGATGTGGGTGCCCTAAAGGTAGTATGGGCTGGTTCTCAACATGCTTTGCAAATCTCAGATCGCATGGCCAAGCTCGTTGCCAGTGATCCTGTGTTTCTCAAAGATGATCGCCCAAGATTGAGTCGCAAAGAATTGTTTAGAAAAACACTGAACAAAGCAGCACATGCATGGAAACTCATTGTAGATCTCCGACTTTCAGAAGAGGAAGCATCAAGTCTAAGGTTTTTTGTTGATGAACCTGCATATACAGATCTTCATTGGGGAATGTTTATACCAGCTATAAAGGGGCAGGCAAATGAAGAGCAGCAGCAGGAGTGGCTTCCTCTTGCAAATAAAATGCAAATAATTGGTTGTTATGCACAAACGGAGATGGGCCATGGTTCCAATGTCCAAGGTCTTGAGACAACTGCAACGTTTGACCCAAATACTGATGAATTTGTTTTAAATAGCCCAACTTTGACTTCAACCAAGTGGTGGCCAGGAGGCTTAGGAAAAGTATCAACACATGCAATTGTATATGCTCGCCTCATAACTGATGGTCAGGACTACGGTGTGCATGGTTTCATTGTTCAAATACGCAGTCTTGAAGATCACCAATCACTTCCAGGAGTTACAGTTGCTGATATTGGTATGAAGTTTGGAAAATGGTGCATATA

Fln Alignment:

Contig6816___DQLAHERKKAQFDVGALKVVWAGSQHALQISDRMAKLVASDPVFLKDDRPRLSRKELFRKTLNKAAHAWKLIVDLRLSEEEASSLRFFVDEPAYTDLHWGMFIPAIKGQANEEQQQEWLPLANKMQIIGCYAQTEMGHGSNVQGLETTATFDPNTDEFVLNSPTLTSTKWWPGGLGKVSTHAIVYARLITDGQDYGVHGFIVQIRSLEDHQSLPGVTVADIGMKFG
A9NUR5_______________EDLARERAETTFDVEAMKIIWAGGRQAFELQHKLASIVANDPVFRKDNKPNMTRKELFIGGIRKAAHCRELALELGLSEDDARTLRTLRGEKAYDDLHWNMFIPVLRTQATAEQQKKWLPLATSMSVIGCYAQTEIGHGSNVQGLETTATFDPSTDEFILNSPTLTSTKWWPGGLGKVATHAIVHARLILD-KDYGVHAFIVQIRSLEDHKPLRTITVGDIGQKFG

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
55		33	66		0.997452
57		66		33	0.997452
58		33		66	0.997452
59			33	66	0.997452
62	33		66		0.997452
64		33		66	0.997452
71			33	66	0.997452
77		33	66		0.997452
80		33	66		0.997452
81	33			66	0.997452
128		25		75	0.996473
131	75		25		0.996473
135		25		75	0.996473
136	75			25	0.996473
137	75			25	0.996473
139	75		25		0.996473
140	75	25			0.996473
142	75		25		0.996473
143			75	25	0.996473
144	75	25			0.996473
146		25		75	0.996473
149		25	75		0.996473
179			20	80	0.995493
183		80	20		0.995493
185	80		20		0.995493
187		20		80	0.995493
189		20	80		0.995493
191		80		20	0.995493
192	80		20		0.995493
197		80	20		0.995493
198		80		20	0.995493
200	20	80			0.995493
202	80			20	0.995493
264		25		75	1.0
265	75		25		1.0
267			25	75	1.0
268	25	75			1.0
270		25		75	1.0
273	75		25		1.0
277			25	75	1.0
280	25			75	1.0
281		25		75	1.0
294	86	13			0.999973
300		13	86		0.999973
305		13	86		0.999973
306	13	86			0.999973
309	13			86	0.999973
761	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
50	69	TTGGCT TTGGCT TTGGCT TT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain