SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6809

Length: 1041 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6809

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3610	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9R943_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	homeobox-leucine zipper protein hat5-like	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	64%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	64%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	64%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	64%
Blast2go	nucleus	GO:0005634	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB83

Fln msg: Overlapping hits, possible frame ERROR between 561 and 561, Distance to subject end: 129 aas, your sequence is shorter than subject: 197 - 328

Fln protein: MMMSGGRMYGGPNVLVMGNENISRSADALEALLSSPxxNGSRSVANLEEVIGNVSKRPFYNSFDQEETGDEDLDDCIHPPEKKRRLTADQVQFLERSFEIENKLEPERKIQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYDILKSRYENLRVDYDSLLKEKDKLRAEVTFLTDKLHDSDHEALTKDSESVDKKV

Protein Length: 198

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCCACCCTCAGCGTCTCCTTGCACACAATTCAATCAATCCCCTCGCCACGCCACCGTCGTTCGCCTTTTCTGCCACTCATCTCTGGATCAACCCATTCCCACAGTCCTACTTCGCTCAATTCAACGGCTAATTTTTGCGAAATCTCTGTCTCTTTCTCTTATTACCGGTTTCTGATCAGAAACTGGCAAAAACAGAGGATTTAGCAGTACCCAACTGGGGAACAGAGCGTTCCGAATGATGGGTATTGTTGTTTCCTGCTGTCTGGTATCTCGCATGCGAGCTCTCTGGAGAAGTAGCTTCTTTCGCCACAAAGTTCACATATCTCTGGGCAACTACTGGTTTTGCTAGCGATTCTGAGGTGGGCATATGCTCAGCTTTTAATGCTACTGGAGGACACCGTTTGAAGGAGTTTTTCTCTGAGGAGATGATGATGTCTGGTGGGAGAATGTATGGTGGGCCGAACGTCCTTGTCATGGGCAACGAGAACATTTCCCGCTCTGCAGATGCACTGGAAGCTCTGCTTTCTTCTCCTxxxxxxAATGGTTCAAGATCTGTGGCTAATTTGGAGGAAGTGATAGGTAATGTGTCAAAAAGACCATTTTACAATTCCTTTGACCAGGAAGAAACTGGAGATGAAGACCTTGATGATTGTATCCATCCACCGGAGAAGAAGAGAAGGCTGACTGCTGACCAAGTGCAGTTCCTCGAACGAAGCTTCGAGATCGAAAACAAGTTGGAACCTGAGCGCAAGATACAGCTAGCCAAGGAGTTGGGCCTCCAACCTAGGCAAGTTGCAGTCTGGTTTCAAAACCGGCGGGCAAGGTGGAAAACTAAGCAGTTGGAAAGGGATTATGATATTCTGAAATCACGCTATGAGAATTTGAGAGTTGATTATGATAGCCTGCTCAAAGAAAAGGATAAATTAAGAGCTGAGGTTACCTTCCTAACAGACAAGCTACACGACAGTGACCATGAAGCCCTCACAAAGGATTCTGAGTCTGTTGACAAGAAGGTCT

Fln Alignment:

Contig6809___MMMSGGRMYGGPNVLVMGNENISRSADALEALLSSPVFNGSRSVANLEEVIGNVSKRPFYNSFDQEETGDEDLDDCIHPPEKKRRLTADQVQFLERSFEIENKLEPERKIQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYDILKSRYENLRVDYDSLLKEKDKLRAEVTFLTDKLH--DSDHEALTKDSESVDKKV
D5AB83_______________MMMSGGRMYGGPNVLVMGNENISRSADALEALLSSPVFNGSRSVANLEEVIGNVSKRPFYNSFDQEETGDEDLDDCIHPPEKKRRLTADQVQFLERSFEIENKLEPERKIQLAKDLGLQPRQVAVWFQNRRARWKTKQLERDYDILKSRYENLRVDYDSLLKEKDKLRAEVTFLTGKLHSKDCDLEAQTKDSEYVDKKV

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
112		16	83		0.994512
113	83		16		0.994512
116	83		16		0.994512
117	83			16	0.994512
118		83	16		0.994512
119	16	83			0.994512
121	71	14	14		0.984337
123		14		85	0.993533
124		71	14		0.984337
125		71		14	0.984337
126		71	28		1.0
127	85		14		0.993533
129	71	14		14	0.984337
130			85	14	0.993533
132		85	14		0.993533
135	71		14		0.984337
136		85		14	0.993533
137	14	14		71	0.984337
138	14			85	0.993533
140			85	14	0.993533
162		25		75	1.0
167	75			25	1.0
168	75		25		1.0
170		25		75	1.0
176			25	75	1.0
179		75	25		1.0
181		25		75	1.0
182	25			75	1.0
187	25			75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain