SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6776

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene6776
CGTCGTGACCTTGGCTGTCACTATTGCTCGTTACGAGACTCCTTCACATACGGATATTAACAAGGTGGGAGTAATTCCAGATCAGCCCTTGCCACCGACTATTCCCATCGATGGGGATGGCTTTTGCAAATGCCTTGAAGGCCGTAACTCAGCGTGTAACATTAATACTACTGCATTTCTTCCACAATGAAATGTTTGTCAAAGATATGCCATTTCAAGTTTGGAAGCCAATAGGTTTACATTGCAGCGAAAAATTTCTTCTCTCAATTCAATTTATTTGTTGCCTTATACTATTAAGTGCAGTTGCCCTGAATATTGAGAAACGTGTCGAAAGGTAAGGTTGATTTTGTACCATGCTACCAATGTTTTAGTCTTTCAATTATTTATTGATGGGAAGAAAATAGAGCTT

Ace file of the UniGene uagpf_v2_unigene6776 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7415	23/23

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D1 protease precursor [Nicotiana plumbaginifolia]	-	-	4.0e-18	63%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	73%
Blast2go	peptidase s41 family protein	-	-	4.43897e-21	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	4.43897e-21	77%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	4.43897e-21	77%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	4.43897e-21	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.43897e-21	77%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	4.43897e-21	77%

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Peptidase S41A, C-terminal peptidase	IPR004447	-	-
Sma3	Interphotoreceptor retinol-binding	IPR005151	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A2XAZ5

Fln msg: your sequence is shorter than subject: 63 - 295

Fln protein: VVTLAVTIARYETPSHTDINKVGVIPDQPLPPTIPIDGDGFCKCLEGRNSACNINTTAFLPQ*

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTATTGCTCGTTACGAGACTCCTTCACATACGGATATTAACAAGGTGGGAGTAATTCCAGATCAGCCCTTGCCACCGACTATTCCCATCGATGGGGATGGCTTTTGCAAATGCCTTGAAGGCCGTAACTCAGCGTGTAACATTAATACTACTGCATTTCTTCCACAATGA___AATGTTTGTCAAAGATATGCCATTTCAAGTTTGGAAGCCAATAGGTTTACATTGCAGCGAAAAATTTCTTCTCTCAATTCAATTTATTTGTTGCCTTATACTATTAAGTGCAGTTGCCCTGAATATTGAGAAACGTGTCGAAAGGTAAGGTTGATTTTGTACCATGCTACCAATGTTTTAGTCTTTCAATTATTTATTGATGGGAAGAAAATAGAGCTT

Fln Alignment:

Contig6776___LAVTIARYETPSHTDINKVGVIPDQPLPPTIPIDGDGFCKCLEGRNSACNIN
A2XAZ5_______________LAVTVARYETPAHTDIDKVGVIPDRPLPASFPTDEDGFCSCLRDSNSACNLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain