SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6764

Length: 909 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6764

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10500	28/29

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger CCCH domain-containing protein 35 n=2 Tax=Oryza sativa RepID=C3H35_ORYSJ	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	72%
Blast2go	Starch and sucrose metabolism	00500	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	72%
Blast2go	cell wall modification	GO:0042545	Biological Process	72%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	72%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	72%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	72%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	72%
Blast2go	cell wall	GO:0005618	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
259	88		11		0.923564
261		88	11		0.923564
263		11	88		0.923564
265		88		11	0.923564
266			88	11	0.923564
267	88		11		0.923564
270	88			11	0.923564
275		88		11	0.923564
276		11		88	0.923564
277	11		88		0.923564
325	11			88	0.923564
431	88			11	0.923564
432	88			11	0.923564
433		11		88	0.923564
434			11	88	0.923564
435		12		87	0.992554
437			14	85	0.993533
439			14	85	0.993533
440	14			42	1.0
441		85	14		0.993533
445		14	85		0.993533
447		85	14		0.993533
448			14	85	0.993533
449		14		85	0.993533
451	14			85	0.993533
453		85		14	0.993533
454		85	14		0.993533
456	85		14		0.993533
462	85	14			0.993533
517	14	85			0.993533
562		33	66		0.997452
563	33			66	0.997452
571			33	66	0.997452
572			33	66	0.997452
577		66	33		0.997452
578	33			66	0.997452
582	66			33	0.997452
583		80	20		0.995493
585	20			80	0.995493
586		80	20		0.995493
587	80		20		0.995493
588	60			20	0.99255
589			20	60	0.99255
590	20			80	0.995493
591		20		80	0.995493
592		20		80	0.995493
598		20	80		0.995493
599	80			20	0.995493
606		20	80		0.995493
607			80	20	0.995493
608	80	20			0.995493
609	20	80			0.995493
827	75			25	0.996473
828		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain