SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6717

Length: 1130 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6717

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8624	34/45
SustainPine v2.0	sp_v2.0_unigene31849	11/45

Source	Descriptions	Term	Type	Identity
AutoFact	Cation-transporting atpase 13a1, putative n=1 Tax=Ricinus communis RepID=B9RHM6_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	cation-transporting atpase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	80%
Blast2go	stem cell fate determination	GO:0048867	Biological Process	80%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	80%
Blast2go	pollen germination	GO:0009846	Biological Process	80%
Blast2go	pollen maturation	GO:0010152	Biological Process	80%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	80%
Blast2go	cation transport	GO:0006812	Biological Process	80%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	80%
Blast2go	meristem maintenance	GO:0010073	Biological Process	80%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	80%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Cof protein	IPR000150	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, unknown pump specificity (type V)	IPR006544	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY8

Fln msg: Overlapping hits, possible frame ERROR between 386 and 314, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 202 - 629

Fln protein: S*PWLSRRDLGCHSFLFISHARPLNTLSAQRPHPNIFCAYVLFSVLGQFAIHITFLISSVKEAEKYMPEECIEPDSEFHPNLVNTVSYMANMMIQVATFAVNYxxxxxxxxxxxxxxxxxxxxxxxxxxTAITSDMFRSLNDWLRLVPLPQPFGSKLLLWAMLMMISCFIWEHSLRWFFPGRMPSWKRRQRQISSSQKKNI*

Protein Length: 203

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTCTTGTTCATTTCTCATGCTCGTCCTCTGAACACACTTTCAGCCCAGCGTCCACATCCCAACATTTTTTGTGCTTATGTGTTATTTTCAGTTCTGGGGCAGTTTGCAATTCACATAACATTTCTTATCTCTTCCGTTAAAGAAGCAGAAAAGTATATGCCAGAAGAGTGTATTGAACCTGATTCGGAGTTTCATCCAAACTTAGTTAATACAGTCTCGTACATGGCCAATATGATGATACAAGTAGCCACGTTTGCTGTAAATTACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTGCTATCACCTCAGACATGTTCCGAAGCTTGAATGATTGGCTAAGGTTAGTTCCTCTCCCACAGCCCTTTGGAAGTAAGCTGCTTCTTTGGGCCATGCTTATGATGATTAGTTGCTTTATTTGGGAGCATAGTCTGCGATGGTTTTTCCCGGGTAGGATGCCTTCATGGAAGCGGAGGCAACGCCAAATATCTTCTAGTCAGAAGAAAAATATCTAATTGTTGCTGTTACTCTTTCGTAGTTACAGAATTCATAGTCCGGTGTAACATTTGATTTTGAGGTCCCTTTTGACCTACATATTCAAAATTTTCTTGGGAGGATTTTTATTATAAACAGATGGCTAGTGTATTTTTACTTCATAATTTGAAAGGGCCTTGCTTGGCTATTTTTTCCGAAGAGAGAAACTCCTCATCCACAGTTTCTTCTCATTATAGTCAAGTTTCAAATGCCTGATTGTTAGAGTCCCATTGTTTTCAAGGCAAAAGAATGCTGCAAGTTTCTGGTTACTGCCATTATATTGTCCATTACTTGGGCCACGTTGGAAAAGATTTTGAAGGAAATGAAATCAATGTTTCTTGGATAATTGTGAGAATGATCTTAACTTGTTATGAGGAGTGATACGACTCTATTGGCCCCCCTTGAAGTGGCATGTACCCTTATTCACCTGTCTTTATTTTTTATGTTTCTGAACCTTTTAAGACGAATTATATATTTTGTTTCTGAACCTTTTAAGATGAAGTT

Fln Alignment:

Contig6717___FLFISHARPLNTLSAQRPHPNIFCAYVLFSVLGQFAIHITFLISSVKEAEKYMPEECIEPDSEFHPNLVNTVSYMANMMIQVATFAVNYMxxxxxxxxxxxxxxxxxxxxxxxxFTAITSDMFRSLNDWLRLVPLPQPFGSKLLLWAMLMMISCFIWEHSLRWFFPGRMPSWKRRQRQISSSQKKNI
B8LRY8_______________FLFISHARPLNTLSTQRPHPNIFCAYVLFSVLGQFAIHITFLISSVKEAEKYMPEECIEPDSEFHPNLVNTVSYMANMMIQVATFAVNYMxxxxxxxxxxxxxxxxxxxxxxxxFTAITSDMFRSLNDWLKLVPLPQPFGSKLLLWAMLMMTSCFIWEHLLRWVFPGRMPSWKRKQRRISSSQKKNI

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
111		14		85	0.993533
112			14	85	0.993533
114		14		85	0.993533
115			14	85	0.993533
118	14			85	0.993533
119		14	85		0.993533
123	85		14		0.993533
124			14	85	0.993533
125		14	85		0.993533
129		14		85	0.993533
132		14		85	0.993533
134		14		85	0.993533
135	14	85			0.993533
142		16	83		0.999991
144			83	16	0.999991
148		16	83		0.999991
149		16		83	0.999991
153		83	16		0.999991
154	83	16			0.999991
155	83			16	0.999991
156			16	83	0.999991
232	35		64		1.0
355			12	87	0.992554
357		12		87	0.992554
358			12	87	0.992554
362		12		87	0.992554
363	87			12	0.992554
367	87		12		0.992554
368		12		87	0.992554
371	87			12	0.992554
379	12			87	0.992554
394		14		85	0.993533
396		85		14	0.993533
397		14		85	0.993533
398	85		14		0.993533
400		85	14		0.993533
406	83			16	0.994512
408	83		16		0.994512
415	16			83	0.994512
418	16		83		0.994512
440		16	83		0.994512
441			16	83	0.994512
443	83	16			0.994512
446	20			80	0.995493
449		20		80	0.995493
450		80	20		0.995493
451			20	80	0.995493
453		80		20	0.995493
454		80	20		0.995493
455	80			20	0.995493
460		80		20	0.995493
462	14		14	57	0.979185
464		14		85	0.993533
467	71	14			0.984337
468	71	14		14	0.984337
469		14	85		0.993533
471	71	14			0.984337
472	85			14	0.993533
475		11		88	0.923564
478		11		88	0.923564
479			11	88	0.923564
480	11	88			0.923564
481		11		88	0.923564
484		11	77		0.968132
488		88		11	0.923564
489	88		11		0.923564
491	11		88		0.923564
494		11		88	0.923564
858		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain