SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6678

Length: 770 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene6678 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3935	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	Diaminopimelate epimerase, chloroplastic n=2 Tax=Oryza sativa RepID=DAPF_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	diaminopimelate epimerase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Diaminopimelate epimerase.	EC:5.1.1.7	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Lysine biosynthesis	00300	81%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	lysine biosynthetic process via diaminopimelate	GO:0009089	Biological Process	81%
Blast2go	diaminopimelate epimerase activity	GO:0008837	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Diaminopimelate epimerase, DapF	IPR001653	-	0.0	-
Sma3	Diaminopimelate epimerase, active site	IPR018510	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	C %	G %	T %	Probability
468	62	37		1.0
613	90		10	0.999898
615	10		90	0.999898
617		10	90	0.999898
618	10	90		0.999898
622		10	90	0.999898
625	90		10	0.999898
628	10		90	0.999898
629		10	90	0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain