SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6569

Length: 1174 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6569

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13939	29/31

Source	Descriptions	Term	Type	Identity
AutoFact	bZIP transcription factor bZIP28 [Glycine max]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	basic leucine zipper transcription factor-like protein	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	59%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	59%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	59%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	-
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ18

Fln msg: Separated hits, possible frame ERROR between 111 and 132, your sequence is shorter than subject: 256 - 585

Fln protein: RRDLGCHSIFQNSENPNQKPSPSPTGRNIKHFHSNSxxxxxxxxKLEFGNGEFSGPELNKIMSNEKLAEIAMTDPKRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSMGLTNENNELKLRLQAMDQQAQLRDALNEALSEEVQRLKLATGQSISMNSHMFQLQQQAPHVAVHQLQQQQQQQHQQQVTNSQQSPGQQTNQNEVLQNTYGAFPGSLSPFLKSDGSNIPASQGSNCSY*

Protein Length: 257

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCCAAAACAGTGAGAATCCGAATCAGAAACCGTCCCCCTCTCCTACTGGCCGTAACATCAAACATTTTCACAGTAATTCCGTxxxxxxxxxxxxxxxxxxxxxAAAACTTGAATTTGGCAATGGCGAATTCAGTGGACCTGAGCTCAATAAAATAATGTCCAACGAAAAACTAGCAGAGATTGCTATGACCGATCCAAAACGTGCAAAGAGAATATTGGCCAATCGGCAGTCGGCTGCACGGTCTAAGGAAAGAAAGATGCGCTACATCTCTGAGCTGGAACGTAAGGTGCAAACGTTGCAAACTGAGGCTACCACATTGTCCGCACAACTTACCCTTTTGCAGAGAGATTCGATGGGGCTCACTAATGAAAATAATGAGCTCAAGCTTCGGCTGCAAGCCATGGACCAGCAAGCCCAACTTCGAGATGCATTAAATGAGGCTCTCAGCGAGGAGGTTCAACGACTAAAATTAGCGACAGGACAGTCAATCTCCATGAATTCACATATGTTTCAGCTTCAGCAGCAGGCCCCCCATGTTGCAGTTCATCAATTACAGCAACAGCAGCAGCAACAACATCAACAACAAGTCACAAATTCACAGCAGTCTCCTGGCCAGCAAACAAACCAAAATGAAGTCCTACAGAACACATATGGTGCTTTTCCGGGTTCACTAAGCCCTTTTCTCAAATCGGATGGCTCAAACATTCCCGCTAGCCAAGGGAGCAATTGTTCCTATTAAACTAGATTCGTCTTGTTTTTAAATGTAACCACTCTTTCCTTTCCTTACTTTTTATGTAATGTATAGTGCAGCCACTTGGGGAGGGAAGGATTGTACATACATTATCCGATGTCATATTTATGTGTTGAACTAACTAGGGATGTTGATAGCTTTGGACAGCGGTCTTTTTAGCATCTTCTGGCTCTAAATTTTATTTGAAGGCGTACATAATTTGAGCCAACTTCATTCTGTTATTGGGCATAATCTGAAGATGTGCATCTTGTATGATGTTCTTAGATCATTCTAGTTCGTATGCAACCGTCGGTTCTTATAAAGGTTCCTGTAATATAGTAGTCTTTTCTGTAGGGAAATAATGACTACGTTTTGATTTATTTCATTGTGACTATGAAGAAAAATGCTAGATATCT

Fln Alignment:

Contig6569___SIFQNSENPNQKPSPSPTGRNIKHFHSNSVxxxxxxxKLEFGNGEFSGPELNKIMSNEKLAEIAMTDPKRAKRILANRQSAARSKERKMRYISELERKVXXXXXXXXXXXXXXXXXXRDSMGLTNENNELKLRLQAMDQQAQLRDALNEALSEEVQRLKLATGQSISMNSHMF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQNEVLQNTYGAFPGSLSPFLKSDGSNIPASQGSNCSY
B8LQ18_______________SSFQNSENPNQKPAPSPTGRNIKHFHSNSMxxxxxxxKLEFGNGEFSGPELNKIMSNEKLAEIAMTDPKRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSMGLTNENNELKLRLQAMDQQAQLRDALNEALSEEVQRLKLATGQSISINSHLFQLQQQGPHVAVHQLQQQQQHQQQHQQQVTNSQQSPGHQTNQNEVLQNTYGAFPGSLGSFLKSDGSNIPASQGSNCSF

SNPs (tot: 116)

Position	A %	C %	G %	T %	Probability
156	60	40			1.0
157			20	80	0.995493
158		20		80	0.995493
159	20	80			0.995493
169			80	20	0.995493
170	80		20		0.995493
176	80		20		0.995493
179	80	20			0.995493
181	80	20			0.995493
183	80	20			0.995493
240	83	16			0.994512
241	83		16		0.994512
243	83	16			0.994512
244			16	83	0.994512
247	16		83		0.994512
253		83		16	0.994512
257	83			16	0.994512
262	16		83		0.994512
265		16	83		0.994512
266	16	83			0.994512
333		14		85	0.993533
335	85			14	0.993533
336		14	85		0.993533
338		85		14	0.993533
339			14	85	0.993533
343	85			14	0.993533
344		85	14		0.993533
345	85		14		0.993533
346		14		85	0.993533
394	87	12			0.992554
395	87		12		0.992554
399	87	12			0.992554
400	87	12			0.992554
401	87			12	0.992554
403	87		12		0.992554
404	87	12			0.992554
407	87	12			0.992554
408	12		87		0.992554
448		90	10		0.90298
449			20	80	0.999996
453	70	10		20	0.999998
459	77	22			0.999999
462	75		25		1.0
463	75		25		1.0
464	75	25			1.0
467	75			25	1.0
468		25	75		1.0
469	25		75		1.0
513	77	22			0.999999
518	77		22		0.999999
520		77	22		0.999999
521	22			77	0.999999
524	77			22	0.999999
527	66		22		0.999999
528	77	22			0.999999
538		11		88	0.923564
539	11		88		0.923564
559		85	14		0.993533
565	77	11	11		0.968132
567		11	77		0.968132
568			11	88	0.923564
569			11	88	0.923564
572	88			11	0.923564
573		11	88		0.923564
574		11		77	0.968132
576		88		11	0.923564
577	88		11		0.923564
578			11	88	0.923564
580	88			11	0.923564
581	88		11		0.923564
583		11		88	0.923564
586	88			11	0.923564
587		11	88		0.923564
588	11	88			0.923564
604	90		10		0.90298
605	90			10	0.90298
607	80		20		0.999996
609		90	10		0.90298
611	90	10			0.90298
613	90			10	0.90298
614	90		10		0.90298
615		90	10		0.90298
616	90	10			0.90298
617	90			10	0.90298
633		90	10		0.90298
634	90			10	0.90298
635			90	10	0.90298
638			10	90	0.90298
669		88	11		0.923564
671	88	11			0.923564
672		88	11		0.923564
673	88			11	0.923564
676	88	11			0.923564
678	88			11	0.923564
679		88		11	0.923564
680	88		11		0.923564
681			11	88	0.923564
682	88	11			0.923564
685			88	11	0.923564
686		11		88	0.923564
687	11		88		0.923564
690	11			88	0.923564
774	88	11			0.923564
776	88			11	0.923564
777			11	88	0.923564
778	11			88	0.923564
780		12		87	0.992554
786			33	66	0.997452
787		33		66	0.997452
789			33	66	0.997452
792	66	33			0.997452
794		33		66	0.997452
796		33		66	0.997452
797	66			33	0.997452
798	33			66	0.997452
800		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain