SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6538

Length: 632 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene6538 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37195	3/24
SustainPine v2.0	sp_v2.0_unigene59563	1/24
SustainPine v2.0	sp_v2.0_unigene60052	3/24
SustainPine v2.0	sp_v2.0_unigene63886	3/24
SustainPine v2.0	sp_v2.0_unigene77121	2/24
SustainPine v2.0	sp_v2.0_unigene78904	2/24
SustainPine v2.0	sp_v2.0_unigene79228	2/24
SustainPine v2.0	sp_v2.0_unigene79911	2/24

Source	Descriptions	Term	Type	Identity
AutoFact	NXRV092_H05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H05 5' similar to Arabidopsis thaliana sequence At2g13930 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.	-	-	86%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	54%
Blast2go	hypothetical protein VITISV_004415 [Vitis vinifera]	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Protein of unknown function DUF789	IPR008507	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

SNPs (tot: 89)

Position	A %	C %	G %	T %	Probability
23	33		66		1.0
41		66		33	0.997452
43	33		66		0.997452
49			25	75	0.996473
50	75		25		0.996473
55	75			25	0.996473
62		75		25	0.996473
64	25		50	25	0.995533
102	50		50		1.0
103		25		75	0.996473
106	50	50			1.0
108	50		50		1.0
109		75		25	0.996473
115	75			25	0.996473
120	75		25		0.996473
126	25		50	25	0.995533
128		25		75	0.996473
134	75		25		0.996473
151			80	20	0.995493
152		20	80		0.995493
154			20	80	0.995493
170	20		80		0.995493
172		80		20	0.995493
174	20		60	20	0.99255
175		20		80	0.995493
177		20	80		0.995493
178		20		80	0.995493
184	20	80			0.995493
185	20			80	0.995493
187		80		20	0.995493
190		20		80	0.995493
192	80		20		0.995493
194		40		60	1.0
200		40		60	1.0
202		80		20	0.995493
204	20		80		0.995493
206	60			40	1.0
209			60	40	1.0
217		20		80	0.995493
218	20		80		0.995493
225		60		40	1.0
227	40		60		1.0
229		80		20	0.995493
230	80			20	0.995493
233		20		80	0.995493
236		80		20	0.995493
241		80		20	0.995493
243	20		80		0.995493
255		80		20	0.995493
257		40		60	1.0
265	80	20			0.995493
266	60			20	0.99255
272		25		75	0.996473
277		75		25	0.996473
285		75		25	0.996473
292		75		25	0.996473
294	25			75	0.996473
299		25		75	0.996473
304		25		75	0.996473
309		66		33	0.997452
317		46		53	1.0
320	21		78		1.0
329		42		57	1.0
335		28		71	1.0
336	14		85		0.999981
350		66		33	1.0
355		80		20	1.0
357	20		80		1.0
372		86		13	0.999973
390	14		85		0.999981
414		90		10	0.90298
416	11		88		0.923564
419		88	11		0.923564
424	11	88			0.923564
434	50		50		1.0
444	28		71		1.0
445		85		14	0.993533
488	25		75		0.996473
496			75	25	0.996473
506		75		25	0.996473
509	50		50		1.0
514			75	25	0.996473
525	25	75			0.996473
529	25	75			0.996473
546	33		66		0.997452
548	33			66	0.997452
552			66	33	0.997452
557			33	66	0.997452
563	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain