SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6523

Length: 1688 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6523

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22582	50/50

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase Asp1, putative n=1 Tax=Ricinus communis RepID=B9RM62_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	aspartic proteinase-like protein 2-like	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR017909	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMX2

Fln msg: your sequence is longer than subject: 503 - 454

Fln protein: MVRSNGECWARSGRFNGSGVRLLAIGVTLLTFFSGFVGVYSVGVFNLRHKFGNRVKSNHSLVEYKAHDMRRHARILANIDMPIGGTADPSVAGLYYAQVGLGNPTKQYYVQVDTGSDILWVNCVPCDKCPKSSGLGIRLSLYNPDKSSSGSIITCDQSFCDLASQTQSVQGCQSGQPCDYNVQYGDGSSTNGYFVKDIMQYNEITGNFKTTSANASVIFGCGYQQSGELQSTDQALDGILGFGQSNTSIVSQLALSGKVPKMFAHCLDGDIGGGILTIGHVVQNGLNTTPIVPNQPHYNVNLTKIEIDGAALNVDQRVFETGEKEGTIIDSGTTLAYISTPAYKPLLAAIMQAEPGLQYSLQQGGTVCFVYDGSVDKAFPVVTFYFEGSLSMKVYPHDYLLLSDNLWCIGWQDSGAQTADNKYVTILGDLVLKNKLVVYDLENQTIGWADYNCSSTIKLQDGSGYEYVGATNISHGIVLRIRIYPLFLIIFLTMVLLQFKSN*

Protein Length: 504

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTGAAAGCTGTCCGGTAAGTTTTGTGAGAGGTTTGGTCACG_-_ATGGTGAGAAGCAATGGCGAATGCTGGGCGAGATCTGGAAGATTTAATGGTAGTGGAGTTAGATTATTGGCTATTGGAGTGACATTATTGACGTTTTTTTCTGGGTTCGTTGGAGTGTACAGCGTCGGTGTTTTTAATTTACGGCACAAATTTGGCAACAGGGTTAAATCGAATCACAGTTTGGTCGAGTATAAGGCGCATGACATGCGACGCCATGCCAGAATTCTGGCAAATATCGACATGCCGATTGGAGGCACTGCAGACCCATCTGTTGCAGGGCTCTATTATGCTCAGGTAGGATTAGGGAACCCGACCAAGCAATACTACGTCCAAGTTGATACAGGCAGCGATATATTGTGGGTTAATTGTGTCCCTTGTGATAAATGCCCAAAGTCAAGCGGGCTTGGGATACGGCTATCACTTTATAATCCTGATAAATCAAGTAGTGGATCTATTATTACATGCGATCAGTCATTTTGTGACTTGGCAAGTCAGACCCAGAGTGTTCAAGGTTGTCAGTCTGGTCAACCATGTGATTATAATGTACAGTATGGAGATGGAAGTTCAACTAATGGGTATTTTGTAAAGGATATAATGCAGTACAATGAAATAACTGGAAATTTCAAAACAACGTCAGCAAATGCAAGTGTCATATTCGGGTGTGGTTATCAACAATCAGGTGAATTGCAATCAACTGATCAAGCACTAGATGGTATTCTTGGCTTTGGACAATCCAATACATCTATAGTTTCACAGCTAGCTTTATCGGGTAAAGTCCCCAAGATGTTTGCTCACTGTTTAGATGGAGATATTGGAGGTGGTATCCTTACTATTGGACATGTGGTACAGAATGGCTTGAATACGACCCCAATAGTCCCTAATCAGCCTCATTACAATGTCAATTTGACAAAAATAGAGATTGATGGTGCAGCATTGAATGTTGACCAGAGGGTGTTCGAAACTGGTGAGAAGGAAGGCACAATTATAGATAGTGGTACAACCCTTGCTTACATATCAACGCCAGCTTATAAACCTTTGTTAGCTGCGATCATGCAAGCAGAGCCAGGTTTGCAATATTCATTACAACAAGGGGGGACAGTTTGCTTTGTGTATGATGGAAGTGTGGATAAAGCATTTCCAGTTGTAACTTTCTACTTTGAAGGGTCACTTAGCATGAAAGTCTACCCTCATGACTATCTTCTATTATCTGATAATCTTTGGTGTATTGGGTGGCAAGACAGTGGAGCACAAACAGCAGACAACAAGTATGTGACTATATTAGGAGATTTGGTGCTAAAGAATAAGCTGGTTGTTTATGATCTCGAGAATCAAACAATTGGATGGGCTGATTACAATTGTTCCTCGACTATCAAGTTACAAGATGGCAGCGGATATGAATACGTAGGTGCAACTAATATTTCGCATGGCATTGTTTTGAGAATAAGGATATACCCTCTCTTTTTAATAATCTTCTTGACAATGGTCTTGCTCCAGTTCAAAAGCAATTAA___TATCTGCCTATAATTATTATTTTTTAATTATATTATTTCTTCGGCAGAAAAGAAATGTACATGGATGTACCCAAAAATGTATTGAAATAAATAATTCAATTGCCAGTCTG

Fln Alignment:

Contig6523___KAHDMRRHARILANI-DMPIGGTADPSVAGLYYAQVGLGNPTKQYYVQVDTGSDILWVNCVPCDKCPKSSGLGIRLSLYNPDKSSSGSIITCDQSFCDLASQTQSVQGCQSGQPCDYNVQYGDGSSTNGYFVKDIMQYNEITGNFKTTSANASVIFGCGYQQSGELQSTDQALDGILGFGQSNTSIVSQLALSGKVPKMFAHC-XXXXXXXXXXXXXHVVQNGLNTTPIVPNQPHYNVNLTKIEIDGAALNVDQRVFETGEKEGTIIDSGTTLAYISTPAYKPLLAAIMQAEPGLQYSLQQGGTVCFVYDGSVDKAFPVVTFYFEGSLSMKVYPHDYLLL-----SDNLWCIGWQDSGAQTADNKYVTILGDLVLKNKLVVYDLENQTIGWADYNCSSTIKLQDGSG
B8LMX2_______________KAHDRARHGRSLNTIVDFTLQGTADPYVAGLYYTRIELGTPPRPFYVQIDTGSDILWVNCKPCNACPLTSGLGVALNFFDPRGSSTASPLSCIDSKC-VSSNQISESVCTTDRYCGYSFEYGDGSGTLGYYVSDEFDYNQYVNQYVTNNASAKITFGCSYNQSGDLTKPDRAVDGIFGFGQNDLSVVSQLNSQGLAPKIFSHCLEGADPGGGILVLGEITEPGMVYTPIVPSQPHYNLNLQGIAVNGQQLSIDPQVFATTNTRGTIIDCGTTLAYLAEEAYEPFVNTIIAAVSQSTQPFMLKGNPCFLTVHSIDEIFPSVTLYFEGA-PMDLKPKDYLIQQLSPDSSPVWCIGWQKSGQQATDSSKMTILGDLVLKDKVFVYDLENQRIGWTSFDCSSTVNVSTDSG

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
37		16		83	0.994512
43			83	16	0.994512
44			16	83	0.994512
46	83	16			0.994512
47		16	83		0.994512
50		16		83	0.994512
54		16	83		0.994512
56		16	83		0.994512
118		14	85		0.993533
121	85	14			0.993533
125	14		85		0.993533
126	85	14			0.993533
127		14	85		0.993533
130	85		14		0.993533
132	85	14			0.993533
134			14	85	0.993533
135	85			14	0.993533
136		14		85	0.993533
137	14			85	0.993533
138		14	85		0.993533
139			85	14	0.993533
141	14			85	0.993533
180		11		88	0.923564
185		11		88	0.923564
186		11	88		0.923564
189		88		11	0.923564
190	88		11		0.923564
196	11		88		0.923564
197		11	88		0.923564
199		11	88		0.923564
200	11			88	0.923564
219	78	21			1.0
220			21	78	1.0
222		21		78	1.0
224			78	21	1.0
225		78	21		1.0
227	78	21			1.0
229	78			21	1.0
230			78	21	1.0
233		21		78	1.0
237	78		21		1.0
242	78	21			1.0
286			64	35	1.0
355		13		86	0.999973
433	88	11			0.923564
434	88		11		0.923564
435		11		88	0.923564
473	8		33		1.0
475		33		66	1.0
477			66	33	1.0
481		33		66	1.0
482	66			33	1.0
483		66		33	1.0
488	66		33		1.0
561	83	16			0.999991
565	83			16	0.999991
570		83		16	0.999991
574		16	83		0.999991
581	83			16	0.999991
582		18	81		0.999994
583	18		81		0.999994
735		12	87		0.992554
737		12		87	0.992554
829		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain