SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6469

Length: 2452 nt

UniGene Fasta

>uagpf_v2_unigene6469
CGTCGTGACCTTGGCTGTCACTCAAAAGGAAATCTGAACAGCAGAGCGTCAAAGCGGGTCTTTATTTTGTTTTTGTTGAGTGATAGAGGAGACAAGGATATCCTTTTGTATATCCTTTCGAAATAACGGGGGCGTTTAGCAGAGGTTTTTGATAATTTTGGGCAAAGAAGGTAGCCGCAGCTCGCAGGGAGGGTTTGGAACCGTCTGGTTTTTGTCCAATAGCGGCGTGCGGTCGTATTAGATTCGTTCCGTGGAGTGTGCTTTAGCTTTTGAAATTCTCATCATTTTGAGGATTTTGAGGAAAACAGGCCTTTGATTTGTGTATTTCGTTGCAGATTTGTTCGTTTGAAGGGGAACGCGGCGCCATGTCTTCGAGGAGCTGTTCATTGTGCGGCCTTAATGGCCACAATTCCCGTACCTGTGTGGGAAGTGGTGTGATGCTCTTTGGGGTTCGTCTGACGGATGGACCAATGAGAAAGAGTGCGAGTATGAATAATTTGTCAAACTTATCTCAGTATGAGCACTCGGATCCGGCTGAGGTTGCCGCTGAAGGTTTTGATGGTTACGTCTCGGATGACCTCGTTCATTCATCCAGCAATGCTCGTGAGAGGAAGAGGGGAGTGCCCTGGACAGAGGAAGAACACCGGATGTTTCTTGTCGGCCTTCAGAGAGTCGGTAAGGGGGATTGGCGGGGCATTTCCAGAAACTTTGTAAAGACTCGAACACCGACGCAGGTTGCCAGCCATGCCCAGAAGTATTTCTTACGGCAGAGTAACATGAATAGGAGACGCCGTCGATCGAGTTTGTTTGACATCACGACTGATACGTTTTTGAGCATTCCGGTTGAATCGGAGGACCTCGTCCCAGGAACCGGAAACACCCCTTCATTTACAAGCCAGCTCAGTCTGGGGCAAAATTCAAGCTTTCTGGCTCCAGAGACTGGGAATTTCGCTATTCCTGTCACATCATTTCCGGTTCCTCTGTCGCATGCAGTGCTGCCAGGTCTACCTGTAGGTAAATCACATGAACTGGAGAAAGAAGAAAGCACTCCGATGGAGTGCGGTGACAGCCCCCGCCCATCTTCATTGGCATTTTCTGAAGATGCGGTGAATGCCTCCGTGAGCCATCCTAAGATAATGGATGTCGGGCCTCTGGGTTATAAAATGTGGAAAGCAGCTACGCCACTTTCGTCCGTTGAAGGGTCAAAGGTTGTGAGGCCCATCCCAATTATTCCGACTCCGCCCTTGAAAACCACTGAATCTGATGTTGAAAAGGCCATGTCCAGCCAGAATCCTGTAATGGAGCCCTCTCCATTATCTTTGAAGCTGTCGGAACAACCAAAGCGGCACTCTGCTTTCCAGTCGATGACATCCCATAGTAGTCATGAGTTGAAATCGCAAGGAAACCTTAGCAATGTAATCAGCGTAGCCTAAGATGTAGATGGAAGGGACTAACCTGCGATGCTAGTCATGATTATAAATGGAAATACAGGCTTGTTAATTTTAGTTCTTTCTTATATGCAAGCAAAAGGTGGAACATGGGATCTATAGACTTACTAGGTATGAAAAATTTGGTTTCTTGTGTACTGCTTTCTACAGGACTGTAATTTCTTTGCTGAATATGGAGATGTGTGACCGTGCAGTTGCGAACTGTGGTTTAATGATGTTCAAGAGAAGATATTCGTTATCTATTTAGTTAGTCTGCTGTACCTGCAATTGTGTTTTTCTTTGTACATGAGGGTTTAAACTCCGCCCAAAGAAGATGCAGATAGTTTATATTTTGGAAGACAAATTTTTGATTGAACGCTTGATAAGAGCCCGAGTTTTTACCATTCACAGGGTGATCCAAGAGGTGTATCCATTGGGCTCTAGAAAGTTATCCGTATGCGATTGGAGAATTCCTTTGATCAGTGGAATTTCTTTCCCCTAATAGACGAATAAAAGGAGCTCTTGTACTTCCTTCAAAACAGAGCTAGGCATGGCTCCTAGTAAGTTCGAGGCATATATTTGATCCCGAGAGATCAAGTTCACGAGCGGCCAAATTATGCATTTTTATATGTTTCTTTATTTTGGTTGCAAGACAACATCCAGCTTTTGTTAGCTATTATGTTAGGTTTGTTTAGTCAGAGAATATTCTCTTCAGACTAGACTCTACAAACAATATTGCTTAATTTACTCAGTAGTAGGACTGCAATCTTAAGTTGGTAAGCTATGTCATCATAAGCACATTAAACAGAATTGCATTTAGTAATAGGGTATTGGTCATCTTCTACAAACTGGATTAAGACTATCTCATTCTGATTAAATGGCTGCTCATTTCTCATTACTGTGTATGTCAGATTGGTTTTCAAAATTTACTTTGAAAAGTGGCATTGATTATTGTTCTTTTGTTGAGCCTGAGATTTAAAAACNGAGGTCATGGTTTTTGATTACTCAGTTGTTAGGACTGCAAT

Ace file of the UniGene uagpf_v2_unigene6469

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9899	153/163
SustainPine v2.0	sp_v2.0_unigene23276	1/163
SustainPine v2.0	sp_v2.0_unigene63832	5/163

Source	Descriptions	Term	Type	Identity
AutoFact	myb family transcription factor [Brassica oleracea]	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	62%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ2

Fln msg:

Fln protein: MSSRSCSLCGLNGHNSRTCVGSGVMLFGVRLTDGPMRKSASMNNLSNLSQYEHSDPAEVAAEGFDGYVSDDLVHSSSNARERKRGVPWTEEEHRMFLVGLQRVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRQSNMNRRRRRSSLFDITTDTFLSIPVESEDLVPGTGNTPSFTSQLSLGQNSSFLAPETGNFAIPVTSFPVPLSHAVLPGLPVGKSHELEKEESTPMECGDSPRPSSLAFSEDAVNASVSHPKIMDVGPLGYKMWKAATPLSSVEGSKVVRPIPIIPTPPLKTTESDVEKAMSSQNPVMEPSPLSLKLSEQPKRHSAFQSMTSHSSHELKSQGNLSNVISVA*

Protein Length: 357

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAGGAAATCTGAACAGCAGAGCGTCAAAGCGGGTCTTTATTTTGTTTTTGTTGAGTGATAGAGGAGACAAGGATATCCTTTTGTATATCCTTTCGAAATAACGGGGGCGTTTAGCAGAGGTTTTTGATAATTTTGGGCAAAGAAGGTAGCCGCAGCTCGCAGGGAGGGTTTGGAACCGTCTGGTTTTTGTCCAATAGCGGCGTGCGGTCGTATTAGATTCGTTCCGTGGAGTGTGCTTTAGCTTTTGAAATTCTCATCATTTTGAGGATTTTGAGGAAAACAGGCCTTTGATTTGTGTATTTCGTTGCAGATTTGTTCGTTTGAAGGGGAACGCGGCGCC_-_ATGTCTTCGAGGAGCTGTTCATTGTGCGGCCTTAATGGCCACAATTCCCGTACCTGTGTGGGAAGTGGTGTGATGCTCTTTGGGGTTCGTCTGACGGATGGACCAATGAGAAAGAGTGCGAGTATGAATAATTTGTCAAACTTATCTCAGTATGAGCACTCGGATCCGGCTGAGGTTGCCGCTGAAGGTTTTGATGGTTACGTCTCGGATGACCTCGTTCATTCATCCAGCAATGCTCGTGAGAGGAAGAGGGGAGTGCCCTGGACAGAGGAAGAACACCGGATGTTTCTTGTCGGCCTTCAGAGAGTCGGTAAGGGGGATTGGCGGGGCATTTCCAGAAACTTTGTAAAGACTCGAACACCGACGCAGGTTGCCAGCCATGCCCAGAAGTATTTCTTACGGCAGAGTAACATGAATAGGAGACGCCGTCGATCGAGTTTGTTTGACATCACGACTGATACGTTTTTGAGCATTCCGGTTGAATCGGAGGACCTCGTCCCAGGAACCGGAAACACCCCTTCATTTACAAGCCAGCTCAGTCTGGGGCAAAATTCAAGCTTTCTGGCTCCAGAGACTGGGAATTTCGCTATTCCTGTCACATCATTTCCGGTTCCTCTGTCGCATGCAGTGCTGCCAGGTCTACCTGTAGGTAAATCACATGAACTGGAGAAAGAAGAAAGCACTCCGATGGAGTGCGGTGACAGCCCCCGCCCATCTTCATTGGCATTTTCTGAAGATGCGGTGAATGCCTCCGTGAGCCATCCTAAGATAATGGATGTCGGGCCTCTGGGTTATAAAATGTGGAAAGCAGCTACGCCACTTTCGTCCGTTGAAGGGTCAAAGGTTGTGAGGCCCATCCCAATTATTCCGACTCCGCCCTTGAAAACCACTGAATCTGATGTTGAAAAGGCCATGTCCAGCCAGAATCCTGTAATGGAGCCCTCTCCATTATCTTTGAAGCTGTCGGAACAACCAAAGCGGCACTCTGCTTTCCAGTCGATGACATCCCATAGTAGTCATGAGTTGAAATCGCAAGGAAACCTTAGCAATGTAATCAGCGTAGCCTAA___GATGTAGATGGAAGGGACTAACCTGCGATGCTAGTCATGATTATAAATGGAAATACAGGCTTGTTAATTTTAGTTCTTTCTTATATGCAAGCAAAAGGTGGAACATGGGATCTATAGACTTACTAGGTATGAAAAATTTGGTTTCTTGTGTACTGCTTTCTACAGGACTGTAATTTCTTTGCTGAATATGGAGATGTGTGACCGTGCAGTTGCGAACTGTGGTTTAATGATGTTCAAGAGAAGATATTCGTTATCTATTTAGTTAGTCTGCTGTACCTGCAATTGTGTTTTTCTTTGTACATGAGGGTTTAAACTCCGCCCAAAGAAGATGCAGATAGTTTATATTTTGGAAGACAAATTTTTGATTGAACGCTTGATAAGAGCCCGAGTTTTTACCATTCACAGGGTGATCCAAGAGGTGTATCCATTGGGCTCTAGAAAGTTATCCGTATGCGATTGGAGAATTCCTTTGATCAGTGGAATTTCTTTCCCCTAATAGACGAATAAAAGGAGCTCTTGTACTTCCTTCAAAACAGAGCTAGGCATGGCTCCTAGTAAGTTCGAGGCATATATTTGATCCCGAGAGATCAAGTTCACGAGCGGCCAAATTATGCATTTTTATATGTTTCTTTATTTTGGTTGCAAGACAACATCCAGCTTTTGTTAGCTATTATGTTAGGTTTGTTTAGTCAGAGAATATTCTCTTCAGACTAGACTCTACAAACAATATTGCTTAATTTACTCAGTAGTAGGACTGCAATCTTAAGTTGGTAAGCTATGTCATCATAAGCACATTAAACAGAATTGCATTTAGTAATAGGGTATTGGTCATCTTCTACAAACTGGATTAAGACTATCTCATTCTGATTAAATGGCTGCTCATTTCTCATTACTGTGTATGTCAGATTGGTTTTCAAAATTTACTTTGAAAAGTGGCATTGATTATTGTTCTTTTGTTGAGCCTGAGATTTAAAAACaGAGGTCATGGTTTTTGATTACTCAGTTGTTAGGACTGCAAT

Fln Alignment:

Contig6469___SRSCSLCGLNGHNSRTCVGSGVMLFGVRLTDGPMRKSASMNNLSNLSQYEHSDPAEVAAEGFDGYVSDDLVHSSSNARERKRGVPWTEEEHRMFLVGLQRVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRQSNMNXXXXXXXLFDITTDTFLSIPVESEDLVPGTGNTPSFTSQLSLGQNSSFLAPETGNFAIPVTSFPVPLSHAVLPGLPVGKSHELEK-EESTPMECGDSPRPSSLAF-SEDAVNASVSHPKIMDV-GPLGYKMWKAATPLSSVE-----GSKVVRXXXXXXXXXLKTTESDVEKAMSSQNPVMEPSPLSLKLSEQPKRHSAFQSMTSHSSHELKSQGNLSNVISVA
B8LLJ2_______________SRSCSQCGHNGHNSRTCVGNAVMLFGVRLTDGPMRKSVSMNNLSNLSQYEHSDPAEDGAEGFDGYVSDDLVHSSSNARERKRGVPWTEEEHRMFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRQSNMNRRRRRSSLFDITTDTFLSLPVE-EDLVPGTGNPLPFPSQLSLGQSSSFPAPEAGNFAIPVTSFPVPLSHVVLPGLPVGKPHELEKQQEFTPMDCSENPQSSPMALTSEAAMDASVSHPNFMDVPPPPQYRIWNPALPFPSVEISATAGSKLVKPIPIIPTPPLKTAESTKKIATSSQKPVMEPSPLSLKLSEQSKRHSAFQSMTSLSSHEMESQGNLGNVISVA

SNPs (tot: 144)

Position	A %	C %	G %	T %	Probability
502	88		11		0.999937
545		10	89		0.999919
654	90			10	0.90298
657		11		88	0.923564
659		12		87	0.992554
661		12		87	0.992554
740		27	72		1.0
743		27		72	1.0
745		72		27	1.0
746		72	27		1.0
751	72			27	1.0
755		81		18	0.999994
758		18	72	9	0.999994
759	72	9		18	0.999994
760	81	18			0.999994
761	18	9	72		0.999994
953		10		90	0.90298
954			10	90	0.90298
958		90		10	0.90298
959			10	90	0.90298
963		90	10		0.90298
1013	88	11			0.923564
1014		88	11		0.923564
1087	85		14		0.993533
1094	14			85	0.993533
1096	85	14			0.993533
1102	85			14	0.993533
1103			14	85	0.993533
1105		14		85	0.993533
1106	14			85	0.993533
1109	14		85		0.993533
1114		10		90	0.90298
1116		90		10	0.90298
1117		10	90		0.90298
1122	90	10			0.90298
1123		10		90	0.90298
1124			90	10	0.90298
1125		90		10	0.90298
1126		90	10		0.90298
1127			10	90	0.90298
1129		90		10	0.90298
1132		10	90		0.90298
1134			90	10	0.90298
1136	10	90			0.90298
1176		18		81	0.999994
1182	81	18			0.999994
1183	81	18			0.999994
1184			81	18	0.999994
1185		81		18	0.999994
1186	81		18		0.999994
1190	81			18	0.999994
1192	18		81		0.999994
1295	85	5	10		0.999793
1296			90	10	0.999898
1299	85			10	0.999793
1300		10	90		0.999898
1302	90		9		0.999842
1309	79	16	4		1.0
1310	79	8	12		1.0
1315		4	79	4	1.0
1318	4	83		12	1.0
1322		91		8	0.999807
1326	4	8		86	0.999539
1343			84	15	1.0
1344	88	11			1.0
1345	88		11		1.0
1346		88		11	1.0
1347	84		11	3	1.0
1351	88			12	1.0
1352	88			12	1.0
1353	88		12		1.0
1357			92	8	0.999718
1573	90	10			0.90298
1577	88			11	0.923564
1578	88	11			0.923564
1580	88	11			0.923564
1582		11		88	0.923564
1583	11			88	0.923564
1586	11			88	0.923564
1653			78	21	1.0
1764		90	10		0.90298
1765		90		10	0.90298
1766	90	10			0.90298
1767	90		10		0.90298
1768	90			10	0.90298
1771	90	10			0.90298
1772		10	90		0.90298
1773	90			10	0.90298
1777	90			10	0.90298
1779	90			10	0.90298
1780		10		90	0.90298
1782		10	90		0.90298
1784		10		90	0.90298
1785	10			90	0.90298
1900	82	17			1.0
1901			11	88	0.999952
1903		11	88		0.999952
1905	82			17	1.0
1908	78	21			1.0
1909		14		85	0.999981
1911		78		21	1.0
1912		85	14		0.999981
1913			14	85	0.999981
1914		14		85	0.999981
1917	80		6		0.999961
1921		13	86		0.999973
1924	7		78		0.999974
1925	78	21			1.0
1971			7	92	0.999664
1974	91			8	0.999766
1975	91		8		0.999766
1977	91	8			0.999766
1979	88	3		7	0.998862
1980			92	7	0.999602
1981	88		7	3	0.998862
1985	88		3		0.998862
1987		3	88	7	0.998862
2024		89		10	1.0
2027	86	3		10	1.0
2030		10	89		1.0
2031	89	10			1.0
2033		89		10	1.0
2034	86		10	3	1.0
2035	86		10	3	1.0
2036		10	89		1.0
2042	7		85	3	0.997433
2045		93	6		0.999453
2047			92	7	0.999532
2079		8		91	0.999807
2080			8	91	0.999807
2082		8	91		0.999807
2085	8			91	0.999807
2086		8	91		0.999807
2088	91			8	0.999807
2089	91			8	0.999807
2091	91		8		0.999807
2093	91		8		0.999807
2094	91			8	0.999807
2097		8		91	0.999766
2098		91		8	0.999766
2102		93		6	0.999999
2110	95		4		0.99692
2116		4		95	0.99692
2369	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain