SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6432

Length: 1306 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6432

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18380	39/44
SustainPine v2.0	sp_v2.0_unigene76937	2/44

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome B5 isoform 1, putative n=2 Tax=Euphorbiaceae RepID=B9S527_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cytochrome b5	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	87%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b5	IPR001199	-	0.0	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NST8

Fln msg:

Fln protein: MASDAKVYKLEDVSRHNTHQDCWIVIEGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSDSARAMMDEYYVGDIDPSSVPSKPKYTPAKQAPYNPDKSSEFIIKILQFLVPLLILGLAVAVRYYTKSS*

Protein Length: 136

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTTTTCCAAAGAATTCCAAGGTTGGACCTTATTCATTTATTCCATGTTTTCACCCACTTTCCCAGCTGCAGGCCTGAGGCTGACACGTCGTGACCTTGGCTGTCACTCAATCAAAACGCTGCCCAACTAACCATTACGAGCACGCCCATTGAATCTGTTTTTTGTATCTTATTCTGGGCAAT_-_ATGGCTTCGGATGCCAAGGTCTACAAACTTGAAGATGTTTCAAGACATAACACTCATCAGGATTGCTGGATAGTGATTGAAGGAAAGGTGTATGATGTAACCAAATTTTTGGAGGACCATCCTGGCGGAGATGAAGTGTTGATCTCAGCAACTGGTAAAGATGCAACCGATGACTTTGAAGATGTTGGACATAGTGACAGTGCTAGAGCTATGATGGATGAATATTACGTGGGAGACATAGATCCCTCATCAGTTCCCTCGAAGCCAAAATACACTCCGGCTAAGCAGGCACCATACAATCCTGACAAGTCATCTGAATTTATCATAAAAATTTTACAGTTTCTTGTTCCATTGCTCATTTTGGGCTTGGCTGTTGCTGTCCGCTACTATACCAAATCAAGCTAA___AATTCAGGAATTTCTATAGGATTCCACCATTGTTTAAGATATATATATCTATGTATTTGTGTGAGTTATGTCGTTAGTCTGGCTTCTATTGTTGTAATTATTTGGAACCATAGTAACAAGATCAGGTTGGCTAGAACTGTTTCAATGCAAATTGTCGCAAAAAAATTACTTACTGTAATAGTATCAACTAAAATGGACTTTTTGATCGACATGATAACAGCTAATGGGACTTCTCATGGGAAAGGGGGTTTAACAAATGAAACTGCACATGAGATAAATGAGATGACAGGCTCGCTGATCAGAATGCCCGTTGACCATCTTATTTGGAGTGTTTTTCATGCAGGCCATCTTCTGTTATTGGGCATTTTGTTTTCTTTCAAGTTCACTGGTTGCCTCTCATTGTTAGAGTTTGTCCCATTATGTTTCTTGGTTGCCATTTATCTCATGAACTGCTCTCTAATGAGAATGTCTCTGGATCATTTTCAGATCAGTTTTGGGTGAGAGGTTTTTTGGCATGTGGAATGCAACATTGCAATTTTTCATATGGCTATTGTTTTCTGCAAGCAATAACAACCCTGCTGCACAACAGAATGGCAGTTTATGTGCAGATATAATACCATTATATGTGCCACCATATGCCTGTGCATATTACATTCAACGGTGTATATGTCCACACACTGCATAATACAAT

Fln Alignment:

Contig6432___MASDAKVYKLEDVSRHNTHQDCWIVIEGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSDSARAMMDEYYVGDIDPSSVPSKPKYTPAKQAPYNPDKSSEFIIKILQFLVPLLILGLAVAVRYYTKSS
A9NST8_______________MDSDTKVYRLEDVSKHNTHQDCWLVIDGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSSSARAMMDEYYVGDIDPSTIPSKPKYTPAKQAPYNPDKSSEFIIKILQFLVPLLILGMAVAVRYYTKSS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
118	14		85		0.993533
161	72		27		1.0
163		27		72	1.0
164	72		27		1.0
165		72		27	1.0
168		27	72		1.0
170	72			27	1.0
171		72		27	1.0
174		72	27		1.0
176	72			27	1.0
177			27	72	1.0
179		27	72		1.0
181	72	27			1.0
184	18			72	0.999994
185	18		81		0.999994
193			27	72	1.0
197	27			72	1.0
198			27	72	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain