SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6407

Length: 976 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6407

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15575	31/33
SustainPine v2.0	sp_v2.0_unigene60908	1/33

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	probable nucleoredoxin 1-like	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	72%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	72%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	72%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX69

Fln msg: Overlapping hits, possible frame ERROR between 934 and 889, Distance to subject end: 49 aas, your sequence is shorter than subject: 236 - 387

Fln protein: MEELNVQEKAATLVGETHESLSSLLCNDERDFLIRNNGHMVKVEELEGKYVGLYFSAHWFPACRHFTPVLSEIYKKISEKEDFEIVFISVDRDEKSFEEYHHTMPWLALPFSDEDTRKKLNQAFQVDGIPCLVVLDKEGRVITTEGVDIIVEYGVEGYPFTAERLDELRAKDEALRAAQTVESLLLSDERDFVLGHGGRKVPVAELxxxxxxxxxxxxxxxxxRNFTPQLVEIYNE

Protein Length: 237

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAGAGTAAAGATGCTGTCAAAATCAGTGCCTGGTTGGATTTCCTTTAGTCAATTGCTTGCTGAGTAAGTTGCTTAGGCAACAACCGATTTGAAATGACTTGTTTGTTCTCCTGAGAGCATAAATTCTCGCCGTTACCACCAGAAGATACTCAGAGTTTGCGGGGTAAGAAAGTCGAAGAACAGGAGAAAGTATACTCGGAACAGAGCGAGAGATCCTGTGTTAGCTTTACT_-_ATGGAAGAACTAAATGTGCAGGAGAAAGCAGCTACTCTTGTGGGTGAAACCCACGAGAGTTTGAGCTCTTTGCTTTGCAACGATGAACGTGATTTCTTGATCAGAAATAATGGACACATGGTGAAAGTTGAAGAACTGGAAGGGAAATATGTGGGTCTGTACTTTTCTGCCCATTGGTTTCCTGCATGCAGGCATTTCACCCCCGTTTTGTCCGAAATCTATAAAAAAATATCGGAGAAGGAGGACTTCGAGATTGTCTTCATTTCTGTAGATCGTGATGAGAAGTCTTTTGAGGAATACCACCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATGAGGATACGAGGAAAAAGCTTAATCAGGCTTTTCAGGTTGATGGCATTCCGTGCCTTGTTGTTCTGGACAAAGAGGGCAGAGTTATAACCACTGAAGGTGTGGACATCATTGTAGAATATGGTGTTGAGGGTTATCCATTCACTGCAGAGAGACTTGATGAACTGAGGGCCAAAGATGAGGCCTTAAGGGCTGCACAGACGGTGGAGTCCCTTCTGCTGTCTGATGAACGAGATTTTGTCCTTGGCCATGGAGGAAGAAAGGTACCGGTAGCTGAGCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAAATTTCACTCCACAACTTGTGGAGATTTATAATGAGC

Fln Alignment:

Contig6407___MEELNVQEKAATLVGETHESLSSLLCNDERDFLIRNNGHMVKVEELEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
A9NX69_______________IDELKAKEEALRAA----QTVESLLLSDERDFVLGHEGTQVPVAELAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
686		25	75		0.996473
688			75	25	0.996473
690	75			25	0.996473
693		25	75		0.996473
696	66		33		0.997452
697		33		66	0.997452
698	66			33	0.997452
699	66		33		0.997452
700		66		33	0.997452
720	85		14		0.993533
722		16		83	0.994512
728	83	16			0.994512
729		16		83	0.994512
730	83			16	0.994512
737	16			83	0.994512
738		16	83		0.994512
739	83			16	0.994512
740		16	83		0.994512
741	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain