SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6369

Length: 644 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6369

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23163	44/44

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=3 Tax=Picea sitchensis RepID=A9NK08_PICSI	-	-	89%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	multicatalytic endopeptidase complex	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate--cysteine ligase.	EC:6.3.2.2	-	0.0	96%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	96%
Blast2go	Metabolic pathways	01100		0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	96%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	96%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	96%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	96%
Blast2go	defense response to fungus	GO:0050832	Biological Process	96%
Blast2go	indole phytoalexin biosynthetic process	GO:0009700	Biological Process	96%
Blast2go	glucosinolate biosynthetic process	GO:0019761	Biological Process	96%
Blast2go	defense response to insect	GO:0002213	Biological Process	96%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	96%
Blast2go	response to heat	GO:0009408	Biological Process	96%
Blast2go	response to ozone	GO:0010193	Biological Process	96%
Blast2go	glutathione biosynthetic process	GO:0006750	Biological Process	96%
Blast2go	protein binding	GO:0005515	Molecular Function	96%
Blast2go	peptidase activity	GO:0008233	Molecular Function	96%
Blast2go	glutamate-cysteine ligase activity	GO:0004357	Molecular Function	96%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	96%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	96%
Blast2go	phragmoplast	GO:0009524	Cellular Component	96%
Blast2go	spindle	GO:0005819	Cellular Component	96%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	96%
Blast2go	proteasome complex	GO:0000502	Cellular Component	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
70	89			10	0.999919
73	89	10			0.999919
74		10		89	0.999919
79	89	10			0.999919
83			89	10	0.999919
150	9			90	0.999842
151		9		90	0.999842
154		90		9	0.999842
157			90	9	0.999842
158	90		9		0.999842
159	90			9	0.999842
160	90	9			0.999842
336		5	94		0.998744
441			90	10	0.999898
443	89		10		0.999919
444		11		88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain