SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6319

Length: 1133 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6319

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15937	51/54

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rapid alkalinization factor preproprotein [Nicotiana attenuata]	-	-	1.0e-19	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	rapid alkalinization factor 1	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rapid ALkalinization Factor	IPR008801	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
53	66		33		0.997452
54			66	33	0.997452
57		66		33	0.997452
58	33	66			0.997452
64			33	66	0.997452
65			33	66	0.997452
66		33	66		0.997452
70		33	66		0.997452
71	33			66	0.997452
73	66	33			0.997452
85			14	85	0.993533
88			14	85	0.993533
90			14	85	0.993533
91	14			85	0.993533
92		14	85		0.993533
93		14		85	0.993533
94			85	14	0.993533
97			14	85	0.993533
98	85	14			0.993533
100	85		14		0.993533
102	14		85		0.993533
103		42		57	1.0
104		85		14	0.993533
106	14		85		0.993533
107			14	85	0.993533
240	81			18	1.0
245		20	80		1.0
246	80	20			1.0
248			80	20	1.0
252	78	21			1.0
253	78			21	1.0
255			78	21	1.0
258	78	21			1.0
262	78			21	1.0
473		22		77	0.999999
642		16		83	0.994512
643			16	83	0.994512
644		83		16	0.994512
646			16	83	0.994512
648			16	83	0.994512
650		16		83	0.994512
651	83	16			0.994512
654			16	83	0.994512
655		83	16		0.994512
656		16		83	0.994512
660	16			83	0.994512
663		16		83	0.994512
664	16			83	0.994512
672	85		14		0.993533
674		14		85	0.993533
675		14		85	0.993533
677	85			14	0.993533
678	85		14		0.993533
679			14	85	0.993533
682		85		14	0.993533
697	87		12		0.992554
699		12		87	0.992554
700		87	12		0.992554
702	12			87	0.992554
703		12		87	0.992554
709			12	87	0.992554
711	87			12	0.992554
714	12		87		0.992554
715	87	12			0.992554
717	12			87	0.992554
949		62		37	1.0
1105	80			20	0.995493
1106	80	20			0.995493
1107			20	80	0.995493
1116		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain