SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6285

Length: 1475 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6285

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16120	60/67
SustainPine v2.0	sp_v2.0_unigene77780	2/67

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZX3

Fln msg:

Fln protein: MGSVKKVVYTVGFWIRETGQALDRLGCRLQGNYGFQEQLSRHRTLMNLVDKAPNVHKDVFVAPNAALVGDVKVGHGSSIWYGCILRGDVNSITVGSGTNIQDHTLVHVAKTKVSRSALPTIIGSNVTIGHSALLHGCTINDEAFVGMGATLLDGVVVEKNAMVAAGALVTPDTRIPSGEVWGGNPARFLRKLTDEEIAFFAQSASNYANLAQTHFTENTKGLDESEAEKLFRKKFSGQSNDYNGHVGVSEILPEQVVPEAATRGPQ*

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTGCGCTCACGCTATTGTTTATGAGCTATTGTTTATGAACTATTGGTACGTTTACACCCGGATCAAACCCGTATCTCAAAAACCCTCACAAGATCGGTCGAGAGTTTTGTCTTTTGGCTGCTCGGGAGTAATGGCATTTAGCGGTTTGTGGGCAGAGTGGTAAACCTCTGCATTTTTCTCCAATTCAACACCTTTAAAACCCCCATATATCGGGTCAGAAATCGAAATATCGAACGCTGAGACAG_-_ATGGGTTCAGTGAAAAAGGTCGTTTATACTGTTGGGTTTTGGATTCGAGAGACGGGTCAAGCTCTTGATCGTTTGGGTTGCCGTCTTCAGGGCAATTATGGATTTCAAGAGCAATTATCAAGGCATCGCACACTGATGAACCTTGTCGATAAAGCTCCAAATGTCCATAAAGATGTCTTTGTTGCTCCTAATGCAGCTTTGGTTGGAGATGTCAAAGTGGGTCATGGGTCATCGATTTGGTATGGGTGCATTCTTAGAGGAGATGTTAATAGCATCACAGTTGGGTCTGGAACAAATATACAGGACCACACCCTTGTCCACGTGGCAAAAACAAAAGTTAGTAGAAGTGCCCTTCCAACTATAATTGGCAGCAATGTTACCATTGGTCACAGCGCTCTTCTACATGGCTGTACTATTAATGATGAGGCCTTTGTTGGAATGGGTGCAACTCTACTTGATGGAGTAGTTGTGGAAAAAAATGCAATGGTTGCTGCTGGAGCACTTGTTACACCTGATACCCGAATACCATCTGGAGAGGTGTGGGGAGGGAACCCTGCAAGGTTTCTGAGGAAGCTTACAGATGAAGAGATTGCATTTTTTGCCCAATCAGCTTCGAACTATGCAAATCTAGCACAGACACATTTCACTGAAAATACCAAGGGTCTTGATGAAAGTGAAGCAGAGAAGTTGTTTCGCAAGAAGTTTTCAGGGCAAAGCAATGACTACAATGGACATGTAGGTGTTAGTGAGATACTCCCTGAACAAGTTGTTCCCGAGGCTGCAACGAGAGGTCCTCAGTAA___GACTTCCAAAGAGATTTAAAGCATTTAGAAAGTTGGGAAGCATAATTCCGTTTTAAAGTGGCCTGCCTCCACATGCACTGGACAAATGCATTGTTTTGAATAAGTTTTGGTGTTATTTTTTGCCTGGGGTAAGAGAAACTGATTTAGTTTCAAATAACTTGAATTATCTCATATTGTCCTTTCTAGTACTCACAAAAACATTGTGCTTGCGTACTTGATATTTTCTTTATCGAGTATATCCCTTAACTGTAAAAGTTCGAGGATAAATGCTTTGGAAAAAGAAACGAGCCATGCTAGAAGCATGGCCCAAATTTATTATCTTGTGGAGTAGTAATTTATCTTATGTCCCATTTTCTATATTGTGTCCAATGTTTAAATTCACTATCATAAAAACATTGCAGGAGTGCAT

Fln Alignment:

Contig6285___MGSVKKVVYTVGFWIRETGQALDRLGCRLQGNYGFQEQLSRHRTLMNLVDKAPNVHKDVFVAPNAALVGDVKVGHGSSIWYGCILRGDVNSITVGSGTNIQDHTLVHVAKTKVSRSALPTIIGSNVTIGHSALLHGCTINDEAFVGMGATLLDGVVVEKNAMVAAGALVTPDTRIPSGEVWGGNPARFLRKLTDEEIAFFAQSASNYANLAQTHFTENTKGLDESEAEKLFRKKFSGQSNDYNGHVG-VSEILPEQVVPEAATRG
A9NZX3_______________MGTLGKVIYMAGFLIRETGQAIDRFGCRLQGNHGFQEQLSRHRTLMNIFEKAPSLHRDVFVAPSAAVMGDVKVGQGSSIWYGSVLRGDVNSIMVGSGTNIQDNTLVHVAKTNISGKVLPTIIGNKVTIGHGAVLHGCTVEDEAFVGMGATLLDGVVLEKNAMVAAGSLVRQNARIPSGEVWAGNPAKFLRKLTDEEIEFILQSALNYQNLAEMHARENAKSYDEIEAYKVLRKKLARQSDDYDSHLGVVREFPPELVVPDRVIEG

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
206	71	28			1.0
207			28	71	1.0
210	71		28		1.0
211	71			28	1.0
212		71	28		1.0
219			28	71	1.0
220	71	28			1.0
221	71			28	1.0
222	71		28		1.0
223	71			28	1.0
225	28	71			1.0
227		71		28	1.0
248	57		42		1.0
264	81			18	0.999994
269		18	81		0.999994
533		77		22	0.999999
1119		12		87	0.992554
1146		85	14		0.993533
1147	85			14	0.993533
1149	85		14		0.993533
1152	14	85			0.993533
1153	33	16		50	1.0
1156			83	16	0.994512
1158	80		20		0.995493
1160	80			20	0.995493
1161	80		20		0.995493
1162	80			20	0.995493
1163		20		80	0.995493
1164	20		80		0.995493
1166	80			20	0.995493
1167		20		80	0.995493
1168	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain