SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6269

Length: 903 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6269

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16166	51/57
SustainPine v2.0	sp_v2.0_unigene61110	4/57

Source	Descriptions	Term	Type	Identity
AutoFact	oligosaccharyltransferase complex subunit beta [Arabidopsis thaliana] gb\|AAL16268.1\|AF428338_1 AT5g66680/MSN2_7 [Arabidopsis thaliana] gb\|AAN12926.1\| putative dolichyl-di-phosphooligosaccharide glycotransferase (oligosaccharyltransferase) [Arabidopsis tha	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein N-linked glycosylation via asparagine	GO:0018279	Biological Process	85%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	85%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	85%
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	85%
Blast2go	transferase activity	GO:0016740	Molecular Function	85%
Blast2go	nucleolus	GO:0005730	Cellular Component	85%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligosaccharyl transferase complex, subunit Wbp1	IPR005013	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
297		33	66		0.997452
302			33	66	0.997452
303	33			66	0.997452
304		33		66	0.997452
307	81		12	6	0.999943
308	81		6	12	0.999943
309		12	6	81	0.999943
310		6	12	81	0.999943
312	81		18		1.0
314	81	18			1.0
315	87	12			0.999964
319	88		11		0.999952
320		11	88		0.999952
322	88		11		0.999952
563	88	11			0.923564
565		12	87		0.992554
567			87	12	0.992554
570		12		87	0.992554
571		12	87		0.992554
578	87		12		0.992554
579	87			12	0.992554
582		12		87	0.992554
585		12		87	0.992554
776	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
888	900	TGTA TGTA TGTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain