SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6249

Length: 1124 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6249

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17615	48/77
SustainPine v2.0	sp_v2.0_unigene76811	24/77

Source	Descriptions	Term	Type	Identity
AutoFact	Histone H2AX n=7 Tax=Spermatophyta RepID=H2AX_PICAB	-	-	85%
FL-Next	sp=Histone H2A; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	histone h2a	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	96%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2A	IPR002119	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
328			92	7	0.999602
329		7		92	0.999602
344		3	6	90	0.996531
347		3	9	87	1.0
352		9		90	1.0
353	90	9			1.0
363	9			90	1.0
364		9	87	3	1.0
365	82	3		13	1.0
366		16	84		1.0
367	12	4	84		1.0
493	85		10	5	0.999793
494	85		5	10	0.999793
495		10		90	0.999898
499		10	85	5	0.999793
500		15	85		1.0
501	90			10	0.999898
502			90	10	0.999898
503			10	90	0.999898
504		90	10		0.999898
511	89	10			0.999919
790		16		83	0.999991
791			16	83	0.999991
793		16		83	0.999991
796			16	83	0.999991
803			16	83	0.999991
806		83	16		0.999991
807			83	16	0.999991
808	83	16			0.999991
809	16			83	0.999991
810		16	83		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain