SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6214

Length: 1037 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6214

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16878	55/84
SustainPine v2.0	sp_v2.0_unigene21454	21/84
SustainPine v2.0	sp_v2.0_unigene23845	1/84
SustainPine v2.0	sp_v2.0_unigene81687	1/84
SustainPine v2.0	sp_v2.0_unigene81815	3/84

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gibberellin-regulated protein [Arabidopsis thaliana] gb\|AAK49610.1\|AF372894_1 AT5g14920/F2G14_40 [Arabidopsis thaliana] emb\|CAC01811.1\| putative protein [Arabidopsis thaliana] gb\|AAK74054.1\| AT5g14920/F2G14_40 [Arabidopsis thaliana] gb\|AAL06958.1\| AT5g149	-	-	9.0e-19	64%
FL-Next	sp=Snakin-2; Solanum tuberosum (Potato).	-	-	0.0	61%
Blast2go	gonadotropin beta chain	-	-	4.75326e-39	79%

Source	InterPros	Term	Type	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
171	85	14			0.999981
172	85		14		0.999981
175	85		14		0.999981
176		85		14	0.999981
177		85	14		0.999981
178	14			85	0.999981
182	84			15	0.999986
183		84	15		0.999986
186			15	84	0.999986
190	84			15	0.999986
191		15		84	0.999986
192	15			84	0.999986
334	15	84			0.999986
335		15	84		0.999986
337		23	76		1.0
338	15		84		0.999986
344			9	90	0.999842
346	4	9	85		0.999726
347		9	9	80	0.999537
350	14		80	4	1.0
352	90	9			0.999872
353	85	4		9	0.999726
355	85	4	9		0.999726
361		10	90		0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain