SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6195

Length: 1108 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene6195 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7393	69/75
SustainPine v2.0	sp_v2.0_unigene63667	1/75
SustainPine v2.0	sp_v2.0_unigene80235	2/75

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	protein	-	-	9.79606e-13	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	9.79606e-13	70%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	9.79606e-13	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
16		25		75	0.996473
389		85	14		0.993533
393	85	14			0.993533
395	14			85	0.993533
449		50	50		1.0
599			44	55	1.0
604		10		90	0.90298
605	90		10		0.90298
608			10	90	0.90298
609	90			10	0.90298
612		10		90	0.90298
616			11	88	0.923564
617		88	11		0.923564
618	88	11			0.923564
620	88		11		0.923564
622	11		88		0.923564
623		11	88		0.923564
683			50	50	1.0
955	84	15			0.999986
1011		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain