SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6173

Length: 2098 nt

UniGene Fasta

>uagpf_v2_unigene6173
CGTCGTGACCTTGGCTGTCACTCAAGCTTATTTATTCGTGTGCCACTCGCGTTCCAACCTCATCCTCATCCTCTAATCGCTGGATATATCGGCCTTCGTCTCCTTGGTGTCCCCAGGGATCGATCCTCGTACGGGCTCTGCGTAAAGCTTCTGTTTTTTCTCAGCAGAAATGGATCCTTACAAGTACCGGCCGTCAAGCGCGTACAATTCTCCTTTCTGGACAACCAACTCCGGTGCCCCAGTGTGGAATAACAATTCCTCATTGACCATCGGCTCAAGAGGTCCTATCCTTTTGGAGGATTATCACCTGGTGGAGAAGATTGCACAGTTTGATAGGGAACGTGTGCCGGAGAGAGTTGTTCATGCTAGAGGAGCTAGTGCGAAGGGTTTTTTTGAGGTGACCCATGACATTTCTCATCTTACTTGCGCCGATTTCCTTCGGGCAGCCGGCGTACAGACCCCCCTGATCGTGCGTTTCTCAACTGTTATCCATGAGCGTGGGAGTCCTGAAACCCTCCGAGATCCTCGCGGGTTCGCTGTGAAATTCTACACCAGAGAGGGGAACTTCGATCTTGTTGGAAATAATTTTCCTGTATTCTTTGTTCGCGATGGTATGAAGTTTCCAGACATGGTTCATGCATTGAAACCAAATCCCAAAAGTCACATTCAAGAAGACTGGAGGATTCTAGATTTCTTCTCTCACCACCCAGAGAGTTTGCATATGTTCACCTTTCTCTTTGATGATCTCGGTATCCCTTTAAACTACAGGCATATGGATGGGTCTGGTGTCCACACTTTTGCCCTTGTTAATAAGGCTGGGAGGCAAACCTATGTGAAGTTTCATTGGAGGCCTACTTGTGGAGTTAAGTGTTTATTGGATGATGAAGCAGTTGTAGTAGGTGGGACAAACCACAGTCATGCAACCAAGGATCTCTATGATTCTATAGCAGCAGGCAACTATCCTGAATGGAAACTTTTTATCCAGACAATGGATCCCCGGGATGAGGATAAATATGACTTTGATCCTTTAGATGTTACAAAAACTTGGCCTGAGGATATCTTTCCTCTTCAACCTGTAGGACGCATGGTCTTGAACAAGAATATTGACAATTTCTTTGCTGAAAACGAGCAGCTTGCATTTGCTCCTGCTCTTGTTGTTCCTGGTGTCTATTACACTGAAGACAAGCTACTCCAAACAAGGATATTCTCATACACAGATACACAAAGGCATCGACTTGGACCCAACTATTTGATGCTGCCAGCCAATGCACCCAAGTGTGCACATCACAATAATCATCATGAGGGATTCATGAACTTCATGCACAGGGATGAAGAGGTCAACTACTTTCCATCAAGGTTTGATCCAGTTCGTCATGCTGAGAGATTTCCCATTCCTTCCCATACCCATACTGGCAAGCGGGAGAAGTGCGTGATAGAGAAGGAGAATAATTTCAAACAACCTGGAGAGCGATATCGTTCATTTGCACCAGAAAGGCAAGAGCGTTTTGTGAAGCGATGGGTGGCAGCTTTGTCAGATCCTAGGGTCACCCATGAAATTTGCAGTATTTGGATATCTTACTGGTCACAGTGTGACAAATCATTGGGTCAGAAGATAGCAGCTCGCCTTAACATGAAAGCAAATATGTAAGAAGTTCGAACTGCAGCATGCAATGTGGGATACGGCATTTTATAATAGGATGCTGCTGCTTGTTAATCTTTCTACATATATGAGGGGCAGGAGAAAGAGGAATTCTCTCTGTGAAGATAAAACTGCTTTTACTTTAGTACATAGTGCTAGTGGTTCATGAAATTGAAATTACAGCTGATGATTTATCAGTGATTGGACATCTGTTAGGTCCAGGGGATAGATAACTACTTATGAACTTTGACAGGTCTATTGTCATGATGTATTGGTATCATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATGAAAGAATATCGGTTATCAGCCTCGATAACAGGTAAATAAATAACCTTGGATCATAGCTCCGGCAAAAAGATATTCTTTGACCAGAGCTACTTAAGGG

Ace file of the UniGene uagpf_v2_unigene6173

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24333	138/221
SustainPine v2.0	sp_v2.0_unigene60368	58/221
SustainPine v2.0	sp_v2.0_unigene82560	10/221
SustainPine v2.0	sp_v2.0_unigene82669	7/221
SustainPine v2.0	sp_v2.0_unigene83305	1/221
SustainPine v2.0	sp_v2.0_unigene83389	1/221

Source	Descriptions	Term	Type	Identity
AutoFact	Catalase n=4 Tax=Pinaceae RepID=B1PYP2_PINSY	-	-	98%
FL-Next	sp=Catalase; Pinus sylvestris (Scots pine).	-	-	98%
Blast2go	catalase	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Catalase haem-binding site	IPR002226	-	-
Sma3	Catalase immune-responsive domain	IPR010582	-	-
Sma3	Catalase core domain	IPR011614	-	-
Sma3	Catalase, mono-functional, haem-containing	IPR018028	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B1PYP2

Fln msg:

Fln protein: MDPYKYRPSSAYNSPFWTTNSGAPVWNNNSSLTIGSRGPILLEDYHLVEKIAQFDRERVPERVVHARGASAKGFFEVTHDISHLTCADFLRAAGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQEDWRILDFFSHHPESLHMFTFLFDDLGIPLNYRHMDGSGVHTFALVNKAGRQTYVKFHWRPTCGVKCLLDDEAVVVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPRDEDKYDFDPLDVTKTWPEDIFPLQPVGRMVLNKNIDNFFAENEQLAFAPALVVPGVYYTEDKLLQTRIFSYTDTQRHRLGPNYLMLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERFPIPSHTHTGKREKCVIEKENNFKQPGERYRSFAPERQERFVKRWVAALSDPRVTHEICSIWISYWSQCDKSLGQKIAARLNMKANM*

Protein Length: 494

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTTATTTATTCGTGTGCCACTCGCGTTCCAACCTCATCCTCATCCTCTAATCGCTGGATATATCGGCCTTCGTCTCCTTGGTGTCCCCAGGGATCGATCCTCGTACGGGCTCTGCGTAAAGCTTCTGTTTTTTCTCAGCAGAA_-_ATGGATCCTTACAAGTACCGGCCGTCAAGCGCGTACAATTCTCCTTTCTGGACAACCAACTCCGGTGCCCCAGTGTGGAATAACAATTCCTCATTGACCATCGGCTCAAGAGGTCCTATCCTTTTGGAGGATTATCACCTGGTGGAGAAGATTGCACAGTTTGATAGGGAACGTGTGCCGGAGAGAGTTGTTCATGCTAGAGGAGCTAGTGCGAAGGGTTTTTTTGAGGTGACCCATGACATTTCTCATCTTACTTGCGCCGATTTCCTTCGGGCAGCCGGCGTACAGACCCCCCTGATCGTGCGTTTCTCAACTGTTATCCATGAGCGTGGGAGTCCTGAAACCCTCCGAGATCCTCGCGGGTTCGCTGTGAAATTCTACACCAGAGAGGGGAACTTCGATCTTGTTGGAAATAATTTTCCTGTATTCTTTGTTCGCGATGGTATGAAGTTTCCAGACATGGTTCATGCATTGAAACCAAATCCCAAAAGTCACATTCAAGAAGACTGGAGGATTCTAGATTTCTTCTCTCACCACCCAGAGAGTTTGCATATGTTCACCTTTCTCTTTGATGATCTCGGTATCCCTTTAAACTACAGGCATATGGATGGGTCTGGTGTCCACACTTTTGCCCTTGTTAATAAGGCTGGGAGGCAAACCTATGTGAAGTTTCATTGGAGGCCTACTTGTGGAGTTAAGTGTTTATTGGATGATGAAGCAGTTGTAGTAGGTGGGACAAACCACAGTCATGCAACCAAGGATCTCTATGATTCTATAGCAGCAGGCAACTATCCTGAATGGAAACTTTTTATCCAGACAATGGATCCCCGGGATGAGGATAAATATGACTTTGATCCTTTAGATGTTACAAAAACTTGGCCTGAGGATATCTTTCCTCTTCAACCTGTAGGACGCATGGTCTTGAACAAGAATATTGACAATTTCTTTGCTGAAAACGAGCAGCTTGCATTTGCTCCTGCTCTTGTTGTTCCTGGTGTCTATTACACTGAAGACAAGCTACTCCAAACAAGGATATTCTCATACACAGATACACAAAGGCATCGACTTGGACCCAACTATTTGATGCTGCCAGCCAATGCACCCAAGTGTGCACATCACAATAATCATCATGAGGGATTCATGAACTTCATGCACAGGGATGAAGAGGTCAACTACTTTCCATCAAGGTTTGATCCAGTTCGTCATGCTGAGAGATTTCCCATTCCTTCCCATACCCATACTGGCAAGCGGGAGAAGTGCGTGATAGAGAAGGAGAATAATTTCAAACAACCTGGAGAGCGATATCGTTCATTTGCACCAGAAAGGCAAGAGCGTTTTGTGAAGCGATGGGTGGCAGCTTTGTCAGATCCTAGGGTCACCCATGAAATTTGCAGTATTTGGATATCTTACTGGTCACAGTGTGACAAATCATTGGGTCAGAAGATAGCAGCTCGCCTTAACATGAAAGCAAATATGTAA___GAAGTTCGAACTGCAGCATGCAATGTGGGATACGGCATTTTATAATAGGATGCTGCTGCTTGTTAATCTTTCTACATATATGAGGGGCAGGAGAAAGAGGAATTCTCTCTGTGAAGATAAAACTGCTTTTACTTTAGTACATAGTGCTAGTGGTTCATGAAATTGAAATTACAGCTGATGATTTATCAGTGATTGGACATCTGTTAGGTCCAGGGGATAGATAACTACTTATGAACTTTGACAGGTCTATTGTCATGATGTATTGGTATCATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATGAAAGAATATCGGTTATCAGCCTCGATAACAGGTAAATAAATAACCTTGGATCATAGCTCCGGCAAAAAGATATTCTTTGACCAGAGCTACTTAAGGG

Fln Alignment:

Contig6173___MDPYKYRPSSAYNSPFWTTNSGAPVWNNNSSLTIGSRGPILLEDYHLVEKIAQFDRERVPERVVHARGASAKGFFEVTHDISHLTCADFLRAAGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQEDWRILDFFSHHPESLHMFTFLFDDLGIPLNYRHMDGSGVHTFALVNKAGRQTYVKFHWRPTCGVKCLLDDEAVVVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPRDEDKYDFDPLDVTKTWPEDIFPLQPVGRMVLNKNIDNFFAENEQLAFAPALVVPGVYYTEDKLLQTRIFSYTDTQRHRLGPNYLMLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERFPIPSHTHTGKREKCVIEKENNFKQPGERYRSFAPERQERFVKRWVAALSDPRVTHEICSIWISYWSQCDKSLGQKIAARLNMKANM
B1PYP2_______________MDPYKYRPSSAYNSPFWTTNAGAPVWNNNSSLTIGSRGPILLEDYHLVEKIAQFDRERVPERVVHARGASAKGFFEVTHDISHLTCADFLRAAGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQEDWRILDFFSHHPESLHMFTFLFDDLGIPLNYRHMDGSGVHTFTLVNKAGRQTYVKFHWRPTCGVKCLLDDEAVVVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPRDEDKYDFDPLDVTKTWPEDIFPLQPVGRMVLNKNIDNFFAENEQLAFGPGLIVPGVYYTEDKLLQTRIFSYSDTQRHRLGPNYLMLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERFPIPSHTHTGKREKCVIEKENNFKQPGERYRSFAPERQERFVKRWVAALSDPRVTHEICSIWISYWSQCDKSLGQKIAARLNMKANM

SNPs (tot: 158)

Position	A %	C %	G %	T %	Probability
47	40			59	1.0
56	93	6			0.999264
57	93			6	0.999264
96		7		92	0.999999
97	7	92			0.999999
135	4		95		0.997218
140			95	4	0.99692
141		53	4	41	1.0
145	93	2			0.985381
146	93		4	2	0.985381
147		2	93	4	0.985381
149		4		95	0.99692
368	87	12			1.0
371			85	14	1.0
374		14	85		1.0
377	84			15	1.0
387	76	8		16	1.0
388		30	65	4	1.0
389	19	14	57	9	1.0
390	9	9	76	4	0.999362
391	11			88	0.999952
457	75	25			1.0
458		73	26		1.0
459	73			26	1.0
465		73		26	1.0
466		73	26		1.0
467		73	26		1.0
471	68			10	1.0
475		21	73	5	1.0
476		15		84	1.0
477		17	82		1.0
478	17	82			1.0
643			90	10	0.999898
644		90	10		0.999898
645	90		10		0.999898
646		10		89	0.999919
649	89			10	0.999919
650	89	10			0.999919
669	89		10		0.999919
670		89		10	0.999919
671	89	10			0.999919
672			10	89	0.999919
674		89	10		0.999919
676	89	10			0.999919
677		10	89		0.999919
678	89			10	0.999919
679	89			10	0.999919
681	89		10		0.999919
685		10	89		0.999919
687			89	10	0.999919
688		10	89		0.999919
708	86		13		1.0
709		86		13	1.0
710		93	6		0.999453
713		90	3	6	0.997544
714		90		9	1.0
715	83	3		6	0.986027
717	90			6	0.997544
719	93			6	0.999264
720		6	93		0.999264
722		6		93	0.999264
724		6	93		0.999264
727		6		90	0.997544
758	28			71	1.0
769	91		8		0.999766
963	86			13	0.999973
964	86			13	0.999973
966			14	85	0.999981
967	85	14			0.999981
1004		40		60	1.0
1029			75	25	0.996473
1030	75	25			0.996473
1031			33	66	0.997452
1153		90	10		0.90298
1232	63		36		1.0
1273	83			16	0.999991
1283		11	88		0.923564
1313	87	12			0.992554
1314			12	87	0.992554
1317	87		12		0.992554
1321	87	12			0.992554
1323			11	88	0.923564
1325		88	11		0.923564
1326	75	12	12		0.975346
1329	11	77			0.968132
1330	66	11	11	11	0.944822
1331		88		11	0.923564
1332	77	11		11	0.968132
1333		11	77	11	0.968132
1334			75	25	1.0
1335		12	87		0.992554
1336	87	12			0.992554
1338		12		87	0.992554
1339			87	12	0.992554
1340	75			12	0.975346
1341	75		12	12	0.975346
1342		12	87		0.992554
1343	87	12			0.992554
1344			75	12	0.975346
1345		12	87		0.992554
1349	85			14	0.993533
1352	14			85	0.993533
1360	87		12		0.992554
1364	85		14		0.993533
1365	85			14	0.993533
1367	10	10		10	0.922578
1368		20	80		0.999996
1371			10	90	0.90298
1372		10		90	0.90298
1373	10		90		0.90298
1374	90	10			0.90298
1375		10		90	0.90298
1376		90		10	0.90298
1377		90		10	0.90298
1378	90			10	0.90298
1379		10	90		0.90298
1380		10		90	0.90298
1381		10		90	0.90298
1388		10	90		0.90298
1389	10	90			0.90298
1430	83	16			0.999991
1435			83	16	0.999991
1438		16	83		0.999991
1439	83	16			0.999991
1440	83			16	0.999991
1441			83	16	0.999991
1442			16	83	0.999991
1447		16	83		0.999991
1495	92		8		0.999718
1497			8	92	0.999718
1504	92			8	0.999718
1506	92		8		0.999718
1507	92	8			0.999718
1508	92			8	0.999718
1510			92	8	0.999718
1513	92			8	0.999718
1514		8	92		0.999718
1570	93	6			0.999264
1646	90		10		1.0
1649	89			10	1.0
1650	89		10		1.0
1652		10	89		1.0
1654	89			10	1.0
1655	89			10	1.0
1656	89		10		1.0
1657			10	89	1.0
1658	89	10			1.0
1663	89	7		2	0.999999
1664	5		89	5	0.971054
1665	92	5			0.991359
1670		94		5	0.997984
1887	51	48			1.0
1970	11		88		0.923564
1971	11			88	0.923564
1972	11			88	0.923564
1973	12			87	0.992554
1976	85			14	0.993533
1980	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain