SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6172

Length: 1184 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6172

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15647	13/91
SustainPine v2.0	sp_v2.0_unigene17902	72/91

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar membrane ATPase subunit c'' [Citrus limon]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	vacuolar atp synthase 21 kda proteolipid subunit	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen transport	GO:0006818	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	vacuole	GO:0005773	Cellular Component	94%
Blast2go	membrane	GO:0016020	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	0.0	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT77

Fln msg:

Fln protein: MAKSSSWAHALVQISPYAYSAVGIGIAIGVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSTNIFAPEAMRAGFAIFASGIIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTNAQ*

Protein Length: 178

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTCCACCCAGAACTGGAGGCCCGAGCGCTTTCTACCCACGAAAGGAAGAAGTTGTGGTGACCTGGCCGTCGTGACCTTGGCTGTCACTCAATAATTTCCCGACGGAGGGACCGAATATGAGATGTTGATTATGGATCTATAGCTGGACGGCCATCGTATTGCCCTTTGAAAGGCTGGTCAGTGTTCTGCTGGCTTCAATTTGATTCAGATTTAGGTCGATCTGGCTTCACTGTATGCAAATTTAGTTAATATTGATATTAAACAGATTGACTAGGTCGAAGATTATCGAGTTTTGACGCGCAAGTAATTGGAACTCTCA_-_ATGGCGAAATCAAGTTCATGGGCACATGCGCTGGTCCAGATATCTCCCTATGCATATTCTGCAGTGGGTATTGGCATCGCGATTGGGGTTTCTGTATTGGGCGCTGCCTGGGGGATATATACAACAGGAAGTAGTCTTATCGGTGCGGCAATTAAGGCTCCGCGTATTACATCCAAAAATCTTATCAGTGTAATTTTCTGTGAAGCTGTGGCCATATATGGTGTTATTGTGGCAATCATTCTACAGACAAAGCTAGAGAGTGTTCCATCTACAAACATATTTGCACCAGAGGCAATGAGAGCAGGATTTGCCATATTTGCATCTGGAATCATCGTGGGTTTTGCCAATCTAGTTTGCGGGGTTTGTGTTGGCATAATCGGAAGTAGCTGTGCACTTGCAGATGCCCAAAATTCTTCACTGTTTGTGAAAATTTTAGTTATTGAAATTTTTGGGAGTGCACTGGGGCTGTTTGGCGTGATTGTTGGCATTATAATGTCAGCCCAAGCTGCCTTTCCAACAAACGCTCAGTAA___GGACACTGACAGATTTCAAGTGTGGCTTTGTAATCTTCTTTATGGTTACATTTTAATTTTTCAGTTTTTGGTTACAGTAGAGAGAATGGTTTACGACTACATGAATTGATTGTCCTCTCGTCCCCTTTCATCATTACAGTGACGATTGTATTTATGCTATCCTCTCTGTGTTTTCCATTCCTCATTTCATGGGCCAGCATACACAAAAAATTCATTTATTCAGTACTCGCTTCTGAAATGTAAACCATTTAGCAACGTCTATTCCAAGTCAGAATGCTGGATCAATATATTCGATTATTTCTTTAGGT

Fln Alignment:

Contig6172___MAKSSSWAHALVQISPYAYSAVGIGIAIGVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPSTNIFAPEAMRAGFAIFASGIIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTNAQ
A9NT77_______________MAKSSSWAHALVQISPYAYSAVGIGIAIGVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSTNMFAPEAMRAGFAIFASGVIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTKVQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
577		20		80	0.995493
580		20	80		0.995493
582		80		20	0.995493
583	80		20		0.995493
587	80	20			0.995493
591			20	80	0.995493
592	80		20		0.995493
594	80			20	0.995493
596	80			20	0.995493
600	80	20			0.995493
601			80	20	0.995493
662	85		14		0.993533
664	85	14			0.993533
665			14	85	0.993533
667			14	85	0.993533
668	14		85		0.993533
670	85	14			0.993533
676	85			14	0.993533
677	85		14		0.993533
684	14			85	0.993533
727		71		28	1.0
734	87	12			0.992554
736		87		12	0.992554
737		12		87	0.992554
741	12	87			0.992554
742	87	12			0.992554
748	87			12	0.992554
752		12	87		0.992554
753	12	87			0.992554
755		87		12	0.992554
756	87	12			0.992554
778	90	10			0.90298
779	90		10		0.90298
781			10	90	0.90298
783			10	90	0.90298
785		15	84		0.999986
794	84	15			0.999986
977		42		57	1.0
978			57	42	1.0
1046	57	42			1.0
1056		40		55	1.0
1069	42		57		1.0
1090	38	61			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain