SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6150

Length: 646 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6150

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14951	44/44

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	ubiquitin fusion protein	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	viral reproduction	GO:0016032	Biological Process	97%
Blast2go	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051436	Biological Process	97%
Blast2go	MyD88-independent toll-like receptor signaling pathway	GO:0002756	Biological Process	97%
Blast2go	regulation of signal transduction	GO:0009966	Biological Process	97%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	97%
Blast2go	translational elongation	GO:0006414	Biological Process	97%
Blast2go	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145	Biological Process	97%
Blast2go	induction of apoptosis by extracellular signals	GO:0008624	Biological Process	97%
Blast2go	anti-apoptosis	GO:0006916	Biological Process	97%
Blast2go	reproductive process	GO:0022414	Biological Process	97%
Blast2go	MyD88-dependent toll-like receptor signaling pathway	GO:0002755	Biological Process	97%
Blast2go	RNA metabolic process	GO:0016070	Biological Process	97%
Blast2go	interphase of mitotic cell cycle	GO:0051329	Biological Process	97%
Blast2go	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051437	Biological Process	97%
Blast2go	cellular membrane organization	GO:0016044	Biological Process	97%
Blast2go	cellular response to stress	GO:0033554	Biological Process	97%
Blast2go	MAPK cascade	GO:0000165	Biological Process	97%
Blast2go	multicellular organismal process	GO:0032501	Biological Process	97%
Blast2go	protein binding	GO:0005515	Molecular Function	97%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	97%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	97%
Blast2go	endosome membrane	GO:0010008	Cellular Component	97%
Blast2go	nucleolus	GO:0005730	Cellular Component	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L40e	IPR001975	-	0.0	-
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
60		83	16		0.999991
66		16	83		0.999991
69		83		16	0.999991
70		16		83	0.999991
75			16	83	0.999991
78		83		16	0.999991
84	66			8	1.0
85	75	8		16	0.99999
111		84		15	0.999986
124			48	51	1.0
130	48		51		1.0
131		48	51		1.0
132		48	51		1.0
133			48	51	1.0
136	48	3	48		1.0
137		44		55	1.0
139	51		48		1.0
141	51	33		3	1.0
142	33	14	51		1.0
143	66	33			1.0
144		11	55	33	1.0
145		88		11	1.0
146	33	66			1.0
147	11			88	1.0
225	92	2			0.991359
228	92	2		5	0.991359
241	92			2	0.991359
280	90	2			0.999998

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain