SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6061

Length: 562 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6061

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2923	11/15
SustainPine v2.0	sp_v2.0_unigene64010	3/15

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb\|AAF63141.1\|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb\|AAL38764.1\| putative RNA polymerase [Arabidopsis thaliana] gb\|AAN13199.1\| putative RNA polymerase [Ara	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	66%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	73%
Blast2go	Pyrimidine metabolism	00240	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	0.0	73%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine synthetase	IPR002133	-	-
Sma3	RNA polymerase Rpb7, N-terminal	IPR005576	-	-
Sma3	RNA polymerase III, subunit Rpc25	IPR013238	-	-

Full-Lengther Next Prediction

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
49			25	75	0.996473
55			25	75	0.996473
57	75	25			0.996473
58	75	25			0.996473
59		75		25	0.996473
61		75	25		0.996473
62	75		25		0.996473
63	75	25			0.996473
66		75		25	0.996473
69		25	75		0.996473
71		25		75	0.996473
72	25	75			0.996473
95		25		75	0.996473
97	75			25	0.996473
99			25	75	0.996473
102	25			75	0.996473
103		25	75		0.996473
108		75	25		0.996473
114	25	75			0.996473
115		25		75	0.996473
118	25	75			0.996473
155		20	80		0.995493
158	80			20	0.995493
160	20		80		0.995493
162	80	20			0.995493
165	80		20		0.995493
166	80		20		0.995493
168		80		20	0.995493
169	80		20		0.995493
170			80	20	0.995493
173		20	80		0.995493
174			80	20	0.995493
175		20	80		0.995493
176	20			80	0.995493
187			16	83	0.994512
190		16		83	0.994512
191		20		80	0.995493
193			80	20	0.995493
199		20	80		0.995493
201	80	20			0.995493
202			80	20	0.995493
229	80		20		0.999996
235		40	60		1.0
238	20			80	0.999996
239			60	40	1.0
240			40	60	1.0
241			20	80	0.999996
242		20		80	0.999996
243		60		40	1.0
249	80	20			0.999996
251	80	20			0.999996
258	40		60		1.0
462		12		87	0.992554

SSRs (tot: 2)

Start position	End position	Sequence	Length
103	115	CTTC CTTC CTTC C	13
316	328	CAT CAT CAT CAT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain