SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6058

Length: 746 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6058

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2055	18/19

Source	Descriptions	Term	Type	Identity
AutoFact	thylakoid ADP,ATP carrier protein [Arabidopsis thaliana] sp\|Q9M024.1\|TAAC_ARATH RecName: Full=Thylakoid ADP,ATP carrier protein, chloroplastic; AltName: Full=Thylakoid ADP/ATP translocase; Flags: Precursor emb\|CAB82266.1\| putative protein [Arabidopsis tha	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	photoprotection	GO:0010117	Biological Process	83%
Blast2go	ATP transport	GO:0015867	Biological Process	83%
Blast2go	photosystem II repair	GO:0010206	Biological Process	83%
Blast2go	response to nematode	GO:0009624	Biological Process	83%
Blast2go	binding	GO:0005488	Molecular Function	83%
Blast2go	ATP transmembrane transporter activity	GO:0005347	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	83%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	83%
Blast2go	thylakoid membrane	GO:0042651	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
179		11		88	0.923564
180	88		11		0.923564
183	88			11	0.923564
185	11		88		0.923564
187		11	88		0.923564
188	88			11	0.923564
189		88		11	0.923564
190	88		11		0.923564
192	88	11			0.923564
197	88	11			0.923564
198	88			11	0.923564
199		11		88	0.923564
200	11		88		0.923564
260		57		42	1.0
316			88	11	0.923564
317		88		11	0.923564
318	88		11		0.923564
321	88		11		0.923564
323		11		88	0.923564
324	11	88			0.923564
325		11	88		0.923564
429			62	37	1.0
516		12		87	0.992554
714		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
509	526	ATTT ATTT ATTT ATTT AT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain